GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000485-TA|BGIBMGA000485-PA|undefined
         (162 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical...    29   1.2  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    29   1.2  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    28   2.8  

>AF078785-11|AAC27097.2|  294|Caenorhabditis elegans Hypothetical
          protein C04E12.12 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 3  LIQQPKEEDHEDRPVMPYVVSSTEYSHYSAYAVFSVDLVGLA 44
          +  QP E  H  +P+   VV ST    Y A AV ++ ++GLA
Sbjct: 9  IFDQPDEVFHPGKPISGRVVLSTTKEKYKARAV-NIKILGLA 49


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
          protein F35F10.12 protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 3  LIQQPKEEDHEDRPVMPYVVSSTEYSHYSAYAVFSVDLVGLA 44
          +  QP E  H  +P+   VV ST    Y A AV ++ ++GLA
Sbjct: 9  IFNQPDEVFHPGKPISGRVVLSTTKEKYKARAV-NIKILGLA 49


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 16   PVMPYVVSSTEYSHYSA---YAVFSVDLVGLAFILKVFIMDNL 55
            P  P +V+ T Y + +A   YA +SV+ + L F+++  + D +
Sbjct: 2059 PFQPIIVNHTRYMNIAAMPAYANYSVEEIRLGFMIEELVKDRV 2101


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.306    0.127    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,104
Number of Sequences: 27539
Number of extensions: 70095
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 3
length of query: 162
length of database: 12,573,161
effective HSP length: 76
effective length of query: 86
effective length of database: 10,480,197
effective search space: 901296942
effective search space used: 901296942
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 56 (26.6 bits)