GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000485-TA|BGIBMGA000485-PA|undefined
         (162 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
          protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 31 SAYAVFSVDLVGLAFILKVFI 51
          + +++ SV LVG  F++ +F+
Sbjct: 18 NTFSLLSVLLVGFLFLILIFL 38


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 19  PYVVSSTEYSHYSAYAVFS 37
           PY +  TE  HY+ Y   +
Sbjct: 762 PYGMELTEAEHYALYTAMA 780


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.127    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,580
Number of Sequences: 429
Number of extensions: 767
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 162
length of database: 140,377
effective HSP length: 53
effective length of query: 109
effective length of database: 117,640
effective search space: 12822760
effective search space used: 12822760
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.1 bits)
S2: 41 (20.6 bits)