GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000485-TA|BGIBMGA000485-PA|undefined
         (162 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02840.1 68415.m00231 expressed protein                             28   2.6  
At1g06630.1 68414.m00700 F-box family protein contains F-box dom...    27   4.6  

>At2g02840.1 68415.m00231 expressed protein
          Length = 155

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 9   EEDHEDRPVMPYVVSSTEYSHYSAYAV 35
           +ED+ED P+ PY+  +  +S  S +A+
Sbjct: 78  QEDYEDPPISPYISEAVVHSPDSTFAL 104


>At1g06630.1 68414.m00700 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 17  VMPYVVSSTEYSHYSAYAVFSVDLVGLAFILKVFI-MDNLENSENTD 62
           V+ + + + EY  YS YA++    V L  +++ ++ +D  E+ E+ D
Sbjct: 234 VISFDLPNLEYLDYSDYALYGYPQVNLESLVEAYLNLDKAEHVESPD 280


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.306    0.127    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,687
Number of Sequences: 28952
Number of extensions: 66751
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 2
length of query: 162
length of database: 12,070,560
effective HSP length: 76
effective length of query: 86
effective length of database: 9,870,208
effective search space: 848837888
effective search space used: 848837888
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 56 (26.6 bits)