Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000484-TA|BGIBMGA000484-PA|IPR002553|Adaptin, N-terminal
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...   357   2e-99
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    34   0.063
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    31   0.78 
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    28   5.5  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   7.2  
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    27   7.2  
SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces...    27   7.2  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    27   9.6  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score =  357 bits (879), Expect = 2e-99
 Identities = 231/691 (33%), Positives = 357/691 (51%), Gaps = 55/691 (7%)

Query: 2   TGKDDEYRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDL 61
           TG++  YRP AIR+L  + D+  + AIER +   IVD                     D+
Sbjct: 111 TGRETIYRPNAIRSLIRVIDANTVPAIERILTTGIVDPISAVASAALVSAYHLYPVAKDI 170

Query: 62  VRRWINEAQEAMTSDHV----------------------MVSYHALAVVAGARRNDRLST 99
           V RW NE Q+A+TS +V                      +  YHAL ++   RR+D ++ 
Sbjct: 171 VSRWNNEVQDAVTSHNVGRKVASSPFFTSTLGYTPNASGISQYHALGLLYRIRRHDSIAM 230

Query: 100 VKLITKLART--PVRSPYTLCLQIRFAAKLAEEDPSEASEPYLEFIESCLRNKSEMVVYE 157
            KL+  L      V + +   + IR+ + L +++ ++  +  + F+   L++K +MV  E
Sbjct: 231 NKLLQLLVSNLGTVSNSHAFVMLIRYISSLMDQN-TQFRDQMVPFLHGWLKSKGDMVNLE 289

Query: 158 AAHAIVNLRK-SAKDLAQAVSVLQIFCGSSKXXXXXXXXXXXXXXXXKHPNAVAACAVDL 216
            A  +V L+  S  DL   VSVL+IF  S +                  P+ V +C +++
Sbjct: 290 VARNMVRLKNISDDDLQPVVSVLKIFLSSHRSATRFSAIRTLNELAMTRPHLVHSCNLNI 349

Query: 217 ENLISDSNRSXXXXXXXXXXXXGAESSIDRLMKQISEFMSEISDEFKIVVVRAIRRLCSK 276
           E+LI+D NRS            G + S+DRLMKQI  FMS+ISD FKI+VV AIR LC K
Sbjct: 350 ESLITDVNRSIATYAITTLLKTGNDESVDRLMKQIVTFMSDISDNFKIIVVDAIRSLCLK 409

Query: 277 YPRKHQSLAAFLAGMLRDEGGLQYKTXXXXXXXXXXXXNPDAKETGLAHLCEFIEDCEHV 336
           +PRK  S+  FL+ +L DEGG ++K              P++KE  LA LCEFIEDCE+ 
Sbjct: 410 FPRKQDSMLTFLSNILCDEGGYEFKRAAVDAISDMIKYIPESKERALAELCEFIEDCEYP 469

Query: 337 TLAVRILHVLGREGPKARQPSRYIRYIYNRVILEXXXXXXXXXXXXXXXXXXXPE--LLP 394
            +AVRIL +LG EGPKA +P+R+IRYIYNR++LE                    +  +  
Sbjct: 470 KIAVRILSILGEEGPKASEPTRFIRYIYNRIMLENAIVRSAAVSALTKFGLNAEDKFVQR 529

Query: 395 NIRVLLSRCQLDEDDEVRDRAVFYSAILDSGNPQLINDYIINIQVPNPVLLEKSLSDYLA 454
           +++V+L+RC  D DDEVRDRA F    L+  +  L    + + ++P+   LE+SL  Y++
Sbjct: 530 SVKVILTRCLEDADDEVRDRAAFSVKALEDRDAFL--PVVKSDKIPSLPALERSLVIYIS 587

Query: 455 SGDQSEPFNIAAVPTAEEPQ------EPKESPVEIE-TRKAPVVSR--------EEQYTE 499
                + F+I +VP   + +        K++  E+E T   P   +        E ++  
Sbjct: 588 ERKFGQGFDIKSVPVLSQEEIDAENLRIKKATTEVEFTEVTPAEDQNALASSNIETEFLN 647

Query: 500 QLQAIPGIEKLGPLFKSCEA-IDLTEPETEYRVRCVKHIFARHLILQFECLNTLSDQLLE 558
            L+++    + GP+ KS  + I+LTE ETE+ V+ VKH+F  HL++QF+  NTLS+ +LE
Sbjct: 648 ALESVSEFNEYGPVLKSSPSPIELTEQETEFVVKVVKHVFKDHLVVQFQLHNTLSEVILE 707

Query: 559 K-VYVRLDSIPGYKISNVVPCDELPYDKQGNIFCLLEFPEN---PIETLGNFGATLEFVV 614
             V V   S        VVP   +   +  +IF   +F ++   P+ TL N   TL+F  
Sbjct: 708 NAVVVSTPSTDDLVEECVVPA-AIVSGEPVSIFVSFKFNDSVPYPLTTLTN---TLQFTT 763

Query: 615 RDCDPTTGLPDSNEGYADTYPLEEIEITCAD 645
           ++ D  TG P+  EGY D Y +++++++  D
Sbjct: 764 KEIDIHTGEPE-EEGYEDEYKIDDLDVSAGD 793


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 4/212 (1%)

Query: 148 RNKSEMVVYEAAHAIVNLRKSAKDLAQAVSVLQIFCGSSKXXXXXXXXXXXXXXXXKHPN 207
           RN    ++Y+A   I++L   +      V++L  F G+                     N
Sbjct: 310 RNAGNAILYQAVRTILDLNSDSSLRVLGVNILAKFLGNRDNNTRYVALNMLKLVVNSEEN 369

Query: 208 AVAACAVDLENLISDSNRSXXXXXXXXXXXXGAESSIDRLMKQISEFMSEISDEFKIVVV 267
           AV      +   ++D + S              E+++  +++++  F+  +SDE +    
Sbjct: 370 AVQRHRSTILACLNDVDSSIQSRALELSTFLVNEANVRFMVRELLSFLDNVSDELRGSTA 429

Query: 268 RAIRRLCSKY-PRKHQSLAAFLAGMLRDEGGLQYKTXXXXXXXXXXXXNPDAKETGLAHL 326
           + I  + + + P K       L  + +  G    ++             P+  E  +  L
Sbjct: 430 QYITEVTNAFAPNKRWHFDTLLR-VFKSAGNFVSESTLSTFLRLIASA-PELHEYAVVKL 487

Query: 327 CEFI-EDCEHVTLAVRILHVLGREGPKARQPS 357
              + ED     L +    V+G  G     P+
Sbjct: 488 YAALKEDVSQEALTLSAFWVIGEYGQMLLSPT 519


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 440 PNPVLLEKSLSDYLASGDQSEPFNIAAVPTAEEPQEPKESPVEIETRKAPVVSREEQYTE 499
           P+P+L+     + L      +   + A    +   + K SP+ + T K  V S +E YT+
Sbjct: 529 PSPLLVGTPSKESLKEASSDDELPVLATKLVDNVIKEK-SPLSL-TPKVVVPSHKETYTD 586

Query: 500 QLQAIPGIEKLGPLFKS 516
           + + I  ++++ PL  S
Sbjct: 587 EKKLIDELDRVNPLNSS 603


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 564 LDSIPGYKISNVVPCDELP-YDKQGNIFCLLEFPENPIETLGNFGATLEFVVRD 616
           LD+IPGY+I   +P   LP Y    +   ++  P++  E+  NF A ++ + R+
Sbjct: 338 LDTIPGYEILGFIPKSSLPIYYTISDTNIIV--PKDDFESKLNFSAFVQSLERE 389


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 242 SSIDRLMKQISEFMSEISDEFKIVVVRAIRRLCS---KYPRKHQSLAAFLAGMLRD 294
           +++  LM  +SE + +IS   +  V+    ++     KYPRK Q +A  +   L+D
Sbjct: 353 ATVQSLMDLLSERLLDISPYCRTKVLHVFIKIFDLPIKYPRKRQEIAELVIRCLQD 408


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 470 AEEPQEPKESPVEIETRKAPVVSREEQYTEQLQAIPGIEKL-GPLFKSCEA-IDLTEPET 527
           AE    P+ +  +++T+  P+V   EQY ++L   P    + G +F S E  +DL E + 
Sbjct: 15  AERRINPQWTVSQLKTKLVPIVGTPEQY-QKLTYEPASSTVPGHVFTSEEENLDLGEFKL 73

Query: 528 E-YRVRCVKHIFARHLILQFECLNTLSDQLL--EKVYVRLDSIPGYKISN 574
           +      V+     HL L F+ L+ +   ++  E+   R DS+  +K  N
Sbjct: 74  QPLGTIVVEDTRPPHLRLDFDDLSQVDKYVMPREQYENRTDSVYAWKKRN 123


>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 683 AASAVCEHLGMPKAAISGE-AVK-EIRGGGLWRAGAPVLMRARLVAAQGTVTMQLIARSP 740
           A +   +  G+P   I+G  +V+ ++  GG      PV++   L+ +QG  T  L     
Sbjct: 112 AGTLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKL 171

Query: 741 REDVAT 746
            E VA+
Sbjct: 172 LEQVAS 177


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 408 DDEVRDRAVFYSAILDSGNPQLINDYII 435
           D ++RDR + YS +L S NP+L    I+
Sbjct: 516 DPDLRDRGIIYSRML-SANPELAKKVIL 542


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,456
Number of Sequences: 5004
Number of extensions: 109312
Number of successful extensions: 276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 12
length of query: 753
length of database: 2,362,478
effective HSP length: 78
effective length of query: 675
effective length of database: 1,972,166
effective search space: 1331212050
effective search space used: 1331212050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)