Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000484-TA|BGIBMGA000484-PA|IPR002553|Adaptin, N-terminal
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)             231   2e-60
SB_56610| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.030
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                32   1.5  
SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)                 32   1.5  
SB_10856| Best HMM Match : RGM_C (HMM E-Value=1.4)                     30   5.9  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   7.8  

>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score =  231 bits (564), Expect = 2e-60
 Identities = 140/376 (37%), Positives = 193/376 (51%), Gaps = 16/376 (4%)

Query: 1   MTGKDDEYRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPD 60
           MTGK+D +R +AIRALC ITD+TMLQ IERY+KQA+VDKNP                  D
Sbjct: 89  MTGKEDMFRASAIRALCRITDNTMLQGIERYLKQAVVDKNPSVSSAALVSSLHLLKPNFD 148

Query: 61  LVRRWINEAQEAMTSDHVMVSYHALAVVAGARRNDRLSTVKLITKLARTPVRSPYTLCLQ 120
           +V+RW+NEAQEA++SD+ MV YHAL ++   +++DRL+  KLI K ++  +RSPY +C+ 
Sbjct: 149 VVKRWVNEAQEAVSSDNTMVQYHALGLLYHIKQSDRLAVSKLIAKHSKHSLRSPYAVCML 208

Query: 121 IRFAAKLAEEDPSEASEPYLEFIESCLRNKSEMVVYEAAHAIVNLRK-SAKDLAQAVSVL 179
           IR A K  +E+P  A  P  +F+E+CLR+KSEMV+YEAA AIVNL+   +KDL  A+SVL
Sbjct: 209 IRIATKYLDEEPEVAESPLYDFLENCLRHKSEMVIYEAARAIVNLKNLKSKDLCPAISVL 268

Query: 180 QIFCGSSKXXXXXXXXXXXXXXXXKHPNAVAACAVDLENLISDSNRSXXXXXXXXXXXXG 239
           Q+F  S +                  P +V  C +DLENLI+D NRS            G
Sbjct: 269 QLFLSSPRPTLRFAAVRTLNKVAMTQPMSVTTCNLDLENLITDVNRSIATLAITTLLKGG 328

Query: 240 AESSIDRLMKQISEFMSEISDEFKIVVVRAIRRLCSKYPR-KHQSLAAFLAGMLRDEG-- 296
            E       K I + +  I +E        +  LC      +H  LA  +  +L  EG  
Sbjct: 329 FE-----YKKAIVDTIITIIEENGEAKETGLSHLCEFIEDCEHTVLATRILHLLGREGPR 383

Query: 297 GLQYKTXXXXXXXXXXXXNPDAKETGLAHLCEFIEDCEHVTLAVRIL-------HVLGRE 349
             Q               N   +   +  L +F   CE +  ++ +L        VL R 
Sbjct: 384 SQQPGRYIRYIYNRVILENAAVRAAAVTSLAKFGAHCESLLPSIEVLLSSPGDPLVLERP 443

Query: 350 GPKARQPSRYIRYIYN 365
            P+    S Y    YN
Sbjct: 444 PPRWSSNSPYSESYYN 459



 Score =  155 bits (377), Expect = 9e-38
 Identities = 81/202 (40%), Positives = 119/202 (58%), Gaps = 13/202 (6%)

Query: 445 LEKSLSDYLASGDQSEPFNIAAVPTAEEPQEPK---------ESPVEIETRKAPVVS-RE 494
           LE++L  Y+   + S PF++  VP A  P + +         E+P       AP+ + R+
Sbjct: 559 LERALHAYVKDTNHSAPFDLKTVPLATTPMQEQVIKAGKTAIETPAPSTKAAAPIAAVRQ 618

Query: 495 EQYTEQLQAIPGIEKLGPLFKSC-EAIDLTEPETEYRVRCVKHIFARHLILQFECLNTLS 553
           + Y  QL AIP   KLGPLF+S  +  +LTE ETEY V CVKH+F  H++ QF+C NTL+
Sbjct: 619 DVYAGQLAAIPAFAKLGPLFRSSPKPAELTESETEYVVNCVKHVFNDHIVFQFDCTNTLN 678

Query: 554 DQLLEKVYVRLDSIPG-YKISNVVPCDELPYDKQGNIFCLLEFPENPIETLGNFGATLEF 612
           DQ+LE V V +D   G +++   + C  LPY++ G  + L++ PE+       F  TL+F
Sbjct: 679 DQVLENVKVEMDPSDGEFEVVCQIECPSLPYNQPGTTYTLIKLPEDHSSVTCTFSNTLKF 738

Query: 613 VVRDCDPTTGLPDSNEGYADTY 634
           +V+DCDP+TG  D  +GY D Y
Sbjct: 739 LVKDCDPSTGEAD-EDGYEDEY 759



 Score =  121 bits (292), Expect = 2e-27
 Identities = 57/107 (53%), Positives = 66/107 (61%)

Query: 295 EGGLQYKTXXXXXXXXXXXXNPDAKETGLAHLCEFIEDCEHVTLAVRILHVLGREGPKAR 354
           +GG +YK             N +AKETGL+HLCEFIEDCEH  LA RILH+LGREGP+++
Sbjct: 326 KGGFEYKKAIVDTIITIIEENGEAKETGLSHLCEFIEDCEHTVLATRILHLLGREGPRSQ 385

Query: 355 QPSRYIRYIYNRVILEXXXXXXXXXXXXXXXXXXXPELLPNIRVLLS 401
           QP RYIRYIYNRVILE                     LLP+I VLLS
Sbjct: 386 QPGRYIRYIYNRVILENAAVRAAAVTSLAKFGAHCESLLPSIEVLLS 432


>SB_56610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 37.9 bits (84), Expect = 0.030
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 683 AASAVCEHLGMPKAAIS-----GEAVKEIRGGGLWRAGAPVLMRARLVAAQGTVTMQLIA 737
           A   + E+LGM     S     G++   +   G++R G  VL++ RL   QG VTM +  
Sbjct: 2   AVKQIIEYLGMQPCERSDRVPEGKSSHALLLAGVYRGGHDVLVKTRLAFDQG-VTMNITV 60

Query: 738 RSPREDVATLLLAAVG 753
           RS    V+ ++L+AVG
Sbjct: 61  RSRDSTVSEVILSAVG 76


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 46/207 (22%), Positives = 92/207 (44%), Gaps = 14/207 (6%)

Query: 438  QVPNPVLLE-KSLSDYLA-SGDQSEPFNIAAVPTAEEPQ-EPK-ESPVEIETRKAPVVSR 493
            Q+P  +  E K LS  L  +G + EP  +  +P   EP+ +P  + P EIET   P+   
Sbjct: 1750 QIPEEIETEVKPLSQILEENGPEVEP--VTQIPKESEPEVKPMTQIPEEIETEVKPMTQI 1807

Query: 494  EEQYTEQLQAIPGI-EKLGPLFKSCEAIDLTEPETEYRVRCVKHIFARHLILQFECLNTL 552
             E++  +++    I E++    K    I   E ETE  V+ +  I    +  + + +  +
Sbjct: 1808 PEEFETEVKPTTQIPEEIETEVKPMTQIP-EEIETE--VKPMTQI-PEEIETEVKPMTQI 1863

Query: 553  SDQLLEKVYVRLDSIPGYKISNVVPCDELPYDKQGNIFCLLEFPENPIETLGNFGATLEF 612
             +++  +V + +  IP    + V P  ++P + +  +  + + PE     +       E 
Sbjct: 1864 PEEIETEVKL-VTQIPEEIETEVKPMTQIPEEIETEVKPMTQIPEEIEMEVKPMTQIPEE 1922

Query: 613  VVRDCDPTTGLPDSNEGYADTYPLEEI 639
            +  +  P T +P+  E   +  P+ +I
Sbjct: 1923 IETEVKPMTQIPEEIE--TEVKPMTQI 1947


>SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)
          Length = 638

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 19/75 (25%), Positives = 34/75 (45%)

Query: 483 IETRKAPVVSREEQYTEQLQAIPGIEKLGPLFKSCEAIDLTEPETEYRVRCVKHIFARHL 542
           IE   + +   ++  ++ +Q    +++LG L   C A++L  P  + RV   KH   R L
Sbjct: 121 IENLYSFITCYKQLQSDTVQNTLAVQRLGELVVKCAAVELYHPRVQARVHHTKHHLYRSL 180

Query: 543 ILQFECLNTLSDQLL 557
            L     +   +Q L
Sbjct: 181 GLNLIICDPPEEQKL 195


>SB_10856| Best HMM Match : RGM_C (HMM E-Value=1.4)
          Length = 235

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 419 SAILDSGNPQLINDYIINIQVPNPVLLEKSLSDYLASGDQSEPFNIAAVPTAEEPQEPKE 478
           SA+ +      +   I ++ V        S  + L SG Q E +N   + T +    P E
Sbjct: 105 SALPNVDAASTLQSCIFDLMVTGNAGFAVSALESLKSGCQDEAYNNLTLYTKDAEGNPSE 164

Query: 479 SPVEIETRKAPVVSREEQ---YTEQLQAIPGIEKLGPLFKSCEAI 520
            P E++ R A    R ++   Y E+ Q +P  +    L    +AI
Sbjct: 165 PPAEVKNRNANGTLRNKRTCLYNEE-QNVPFSKSTKELLVLIDAI 208


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 511  GPLFKSCEAIDLTEPETEYRVRCVKHIFARHLILQFECLNTLSDQLLEKVYVRLDSIPGY 570
            GPLF  C+AI LT  +T Y + C+ H   +    QF     +S     + ++ L   P  
Sbjct: 5287 GPLFDKCKAIGLTLAQTYYNI-CL-HDIIQSENQQFAIYAVISYADFCQEFLNLTVWPAR 5344

Query: 571  KISNVVPCDELPY--DKQGNIFCLLEFP 596
            ++         PY    + N  C+  +P
Sbjct: 5345 ELCRYFQTQSFPYWVGSRCNTPCVFGYP 5372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,453,682
Number of Sequences: 59808
Number of extensions: 794464
Number of successful extensions: 1924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1915
Number of HSP's gapped (non-prelim): 9
length of query: 753
length of database: 16,821,457
effective HSP length: 88
effective length of query: 665
effective length of database: 11,558,353
effective search space: 7686304745
effective search space used: 7686304745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)