GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000484-TA|BGIBMGA000484-PA|IPR002553|Adaptin, N-terminal
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548...   498   e-141
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664...   344   1e-94
09_02_0474 - 9721338-9722049,9722530-9722537                           33   0.84 
06_03_0399 - 20403488-20405092                                         32   1.9  
02_05_0720 - 31213391-31213617,31213724-31213772,31213898-312140...    32   1.9  
11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188     31   2.6  
10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899     30   5.9  
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412...    30   5.9  

>07_01_0718 +
           5484553-5484601,5484836-5484933,5485028-5485078,
           5485744-5485857,5485887-5485937,5485938-5486138,
           5486240-5486341,5486879-5486986,5487053-5487286,
           5488250-5488500,5488592-5488763,5489165-5489320,
           5489405-5489455,5489499-5489591,5489814-5490014,
           5490105-5490236,5490308-5490481,5490755-5490994,
           5491213-5491407
          Length = 890

 Score =  498 bits (1228), Expect = e-141
 Identities = 285/702 (40%), Positives = 382/702 (54%), Gaps = 21/702 (2%)

Query: 1   MTGKDDEYRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPD 60
           M  K D YR  AIR LC I DST+L  IERY+KQAIVDKNP                 P+
Sbjct: 133 MNSKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPE 192

Query: 61  LVRRWINEAQEAMTSDHVMVSYHALAVVAGARRNDRLSTVKLITKLARTPVRSPYTLCLQ 120
           +V+RW NE QEA+ S   +V +HALA++   R+NDRL+  KL+T L R  VRSP   CL 
Sbjct: 193 VVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLL 252

Query: 121 IRFAAKLAEEDPSEAS---EPYLEFIESCLRNKSEMVVYEAAHAIVNLRK-SAKDLAQAV 176
           IR+ +++  E    +     P+ +F+ESCLRNK+EMV+ EAA AI  L   ++++L  A+
Sbjct: 253 IRYTSQVIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAI 312

Query: 177 SVLQIFCGSSKXXXXXXXXXXXXXXXXKHPNAVAACAVDLENLISDSNRSXXXXXXXXXX 236
           +VLQ+F  SSK                 HP AV  C +D+E+LISD NRS          
Sbjct: 313 TVLQLFLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLL 372

Query: 237 XXGAESSIDRLMKQISEFMSEISDEFKIVVVRAIRRLCSKYPRKHQSLAAFLAGMLRDEG 296
             G ESS+DRLMKQ++ FMS+I+DEFKIVVV AIR LC K+P K++SL  FL+ +LR+EG
Sbjct: 373 KTGNESSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEG 432

Query: 297 GLQYKTXXXXXXXXXXXXNPDAKETGLAHLCEFIEDCEHVTLAVRILHVLGREGPKARQP 356
           G +YK              PDAKE+GL HLCEFIEDCE   ++ +ILH LG EGPK   P
Sbjct: 433 GFEYKKAIVDSIIILIRDIPDAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDP 492

Query: 357 SRYIRYIYNRVILEXXXXXXXXXXXXXXXXXXXPELLPNIRVLLSRCQLDEDDEVRDRAV 416
           S+YIRYIYNRVILE                     L P I VLL RC  D DDE+     
Sbjct: 493 SKYIRYIYNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDELS---- 548

Query: 417 FYSAILDSGNPQLI--NDYIINIQVPNPVLLEKSLSDYLASGDQSEPFNIAAVPTAEEPQ 474
             S++L   +  L+      +++   +P   E S + +  S   S      + P AE+  
Sbjct: 549 IVSSVLKRAHQTLLPGKKPFLHLLCFSPQ--EPSEAPFDIS---SVSLETKSQPLAEKKT 603

Query: 475 EPKESPVEIETRKAPVVSREEQYTEQLQAIPGIEKLGPLFKSCEAIDLTEPETEYRVRCV 534
             K+          PV + +  Y + L +IP     G LFKS   ++LTE ETEY V  V
Sbjct: 604 TGKKPTGPASALSGPVPTVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVNVV 663

Query: 535 KHIFARHLILQFECLNTLSDQLLEKVYVRLDSIPGYKISNVV--PCDELPYDKQGNIFCL 592
           KHI+  H++LQ+ C NT+ +QLLE+V V +D+    + S V       LPYD  G  F  
Sbjct: 664 KHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTFVA 723

Query: 593 LEFPENPIETLGNFGATLEFVVRDCDPTTGLPDSNEGYADTYPLEEIEITCADQFRTRAA 652
            E  E  + T G F   L+F+V++ DP+TG  D ++G  D Y LE++EIT AD +  +  
Sbjct: 724 FEKLEGVLAT-GKFSNILKFIVKEVDPSTGEAD-DDGVEDEYQLEDLEITSAD-YMLKVG 780

Query: 653 TDDWXXXXXXXXXXXXXCDTFGL-TQSDVGAAASAVCEHLGM 693
             ++              D +GL  +  +  A SAV   LGM
Sbjct: 781 VSNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGM 822


>03_02_0235 +
           6644083-6644125,6645218-6645315,6645448-6645498,
           6645573-6645686,6645771-6645971,6646047-6646148,
           6647245-6647352,6647745-6647995,6648108-6648279,
           6648341-6648397,6648555-6648710,6648807-6648857,
           6649053-6649193,6649270-6649464,6649534-6649665,
           6649768-6649941,6650396-6650635,6650761-6650955
          Length = 826

 Score =  344 bits (846), Expect = 1e-94
 Identities = 224/579 (38%), Positives = 298/579 (51%), Gaps = 46/579 (7%)

Query: 206 PNAVAACAVDLENLISDSNRSXXXXXXXXXXXXGAESSIDRLMKQISEFMSEISDEFKIV 265
           P AV  C VDLE+L+SD NRS            G ESS+DRLMKQI+ FMS+I+DEFKIV
Sbjct: 245 PLAVTNCNVDLESLMSDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIV 304

Query: 266 VVRAIRRLCSKYPRKHQSLAAFLAGMLRDEGGLQYKTXXXXXXXXXXXXNPDAKETGLAH 325
           VV AIR LC K+P K++S+  FL+  LR+EGG +YK              PDAKE GL +
Sbjct: 305 VVEAIRSLCLKFPLKYRSMMNFLSNSLREEGGFEYKKAIVDSIVTLISEIPDAKEIGLLY 364

Query: 326 LCEFIEDCEHVTLAVR-------------------ILHVLGREGPKARQPSRYIRYIYNR 366
           LCEFIEDCE   L+ +                   ILH+LG EGP+   PSRYIRYIYNR
Sbjct: 365 LCEFIEDCEFTYLSSQLPMNYQVVLLDIVKNADAMILHLLGNEGPRTSDPSRYIRYIYNR 424

Query: 367 VILEXXXXXXXXXXXXXXXXXXXPELLPNIRVLLSRCQLDEDDEVRDRAVFYSAILDS-- 424
           VILE                     L P I VLL RC  D DDEVRDRA  Y   LD   
Sbjct: 425 VILENATVRASAVSTLAKFGALVDALKPRIFVLLRRCLFDTDDEVRDRATLYLQTLDGEV 484

Query: 425 --GNPQL-INDYII-NIQVPNPVLLEKSLSDYLASGDQSEPFNIAAV--PTAEEPQEPKE 478
             G+ +  + +++  +  VP    LE SL  Y  S    EPF+I+ V      +P + K+
Sbjct: 485 AVGSTEKDVKEFLFGSFDVP-LANLEASLKTYEPS---EEPFDISLVSREVKSQPLQEKK 540

Query: 479 SPVEIETRKAPV---VSREEQYTEQLQAIPGIEKLGPLFKSCEAIDLTEPETEYRVRCVK 535
           +P +     AP    V   + Y + L +IP     G LFKS E ++LTE ETEY +  VK
Sbjct: 541 APGKKPPAGAPAPAPVPAVDAYQKILSSIPEFSGFGRLFKSSEPVELTEAETEYAINVVK 600

Query: 536 HIFARHLILQFECLNTLSDQLLEKVYVRLDSIPGYKISNVV--PCDELPYDKQGNIFCLL 593
           HI++ H++LQ+ C NT+ +QLLE V V +D+    + S V   P   LPYD  G IF   
Sbjct: 601 HIYSSHVVLQYNCTNTIPEQLLENVTVYVDATDAEEFSEVCSKPLRSLPYDSPGQIFVAF 660

Query: 594 EFPENPIETLGNFGATLEFVVRDCDPTTGLPDSNEGYADTYPLEEIEITCADQFRTRAAT 653
           E PE+ +   G F   L+F+V++ D +TG  D  +G  D Y +E++EI  AD +  R A 
Sbjct: 661 EKPEH-VPATGKFSNVLKFIVKEVDTSTGEVD-EDGVEDEYQIEDLEIVSAD-YMLRVAV 717

Query: 654 DDWXXXXXXXXXXXXXCDTFGL-TQSDVGAAASAVCEHLGMPKAAISGEAVKEIRG---- 708
            ++              D +GL  +  +  A SAV   LGM     +    K  R     
Sbjct: 718 SNFRNAWENMDPESERVDEYGLGVRESLAEAVSAVISILGMQPCEGTEVVPKNARSHTCL 777

Query: 709 -GGLWRAGAPVLMRARL-VAAQGTVTMQLIARSPREDVA 745
             G++   A VL+R    ++    V M+L  RS   +V+
Sbjct: 778 LSGVFIGDAKVLVRLSFGLSGPKEVAMKLAVRSDDPEVS 816



 Score =  123 bits (296), Expect = 6e-28
 Identities = 66/171 (38%), Positives = 96/171 (56%), Gaps = 4/171 (2%)

Query: 1   MTGKDDEYRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPD 60
           M  K D YR  AIR LC I D T+L  IERY+KQAIVDKNP                 P+
Sbjct: 114 MNSKTDMYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQANPE 173

Query: 61  LVRRWINEAQEAMTSDHVMVSYHALAVVAGARRNDRLSTVKLITKLARTPVRSPYTLCLQ 120
           +V+RW NE QEA+ S   +V +H LA++   R+NDRL+  K+++ L R  VRSP   CL 
Sbjct: 174 IVKRWSNEVQEAVQSRFALVQFHGLALLHQIRQNDRLAISKMVSGLTRGSVRSPLAQCLL 233

Query: 121 IRFAAKLAEEDPSEASEPYLEFIESCLRNKSEMVVYEAAHAIVNLRKSAKD 171
           IR+ +++A   P   +   ++ +ES + +++  +   A  AI  L K+  +
Sbjct: 234 IRYTSQVAMTRPLAVTNCNVD-LESLMSDQNRSI---ATLAITTLLKTGNE 280


>09_02_0474 - 9721338-9722049,9722530-9722537
          Length = 239

 Score = 33.1 bits (72), Expect = 0.84
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 693 MPKAAISGEAVKEIRGGGLWRAGAPVLMRARLVAAQGTVTMQLIARSPREDVATLLL 749
           + +AA+  +    IRGGG    G  +  + RLV    TVT+  + RS  +    LL+
Sbjct: 91  LDRAAMKADLFWAIRGGGSGNFGIVLSCKLRLVPIPATVTVFTVHRSRNQSTTNLLI 147


>06_03_0399 - 20403488-20405092
          Length = 534

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 674 GLTQSDVGAAASAVCEHLGMPKAAISGEAVKEIRGGGLWRAGAPVLMRARLVAAQGTVTM 733
           GL    V  A     +   + +AA+  +    IRGGG    G  +  + RLV    TVT+
Sbjct: 202 GLASDHVLDATMVEAKGRLLDRAAMGEDLFWAIRGGGGGNFGIVLSWKLRLVPVPATVTV 261

Query: 734 QLIARSPREDVATLLLA 750
             + RS R   AT LLA
Sbjct: 262 FTVHRS-RNQSATDLLA 277


>02_05_0720 -
           31213391-31213617,31213724-31213772,31213898-31214076,
           31215861-31216110
          Length = 234

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 672 TFGLTQSDVGAAASAVCEHLGMPKAAISGEAVKEIRGGGLWRAGAPV-LMRARLVAAQGT 730
           T  L + D  AAA+A+         AI+G + +E+    L R G PV  ++A + AA   
Sbjct: 11  TIDLREEDEAAAAAAM--------KAIAGRSDEEVLAAVLARKGGPVPFLQAAIDAAAAA 62

Query: 731 VTMQLIARSPREDVATLL 748
            T  +  RS  E +A +L
Sbjct: 63  ATKAIAGRSDEEVLAAVL 80


>11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188
          Length = 637

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 604 GNFGATLEFVVRDCDPTTGLPDSNE------GYADTYPLEEIEITCADQFRTRAATDD 655
           G FGA L FV  D  P     D           AD Y +E +++ C D+   R   DD
Sbjct: 270 GAFGALLHFVYTDTLPEMASADVPAMARQLIAAADKYKVERLKLVCEDKLSRRVVADD 327


>10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899
          Length = 280

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 543 ILQFECLNTLSDQLLEKVYVRLDSIPGYKISNVVPCDELPYDKQGNIFCLLEFPENPIET 602
           +L  ECL  +S + L K+Y  ++     + +N+    ++  +++ NIF + E PE+ ++ 
Sbjct: 165 VLSKECLGRMSQEYLAKLYA-MEIAEEKEKANLKKIQDVLRNERENIFNIREKPEDVLKQ 223

Query: 603 LGNFG-ATLEFVVRD 616
               G A  E VV D
Sbjct: 224 YHTKGYAEYEVVVDD 238


>02_01_0561 +
           4120268-4120339,4121462-4121588,4121715-4121770,
           4121841-4121912,4122017-4122128,4122247-4122284,
           4122412-4122513,4122619-4122675,4122755-4122826,
           4122992-4123093,4123210-4123405,4123988-4124094,
           4124497-4124691,4124771-4124857,4124905-4124913,
           4125599-4125703,4126067-4126164,4126250-4126328,
           4126912-4127000,4127086-4127200
          Length = 629

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 467 VPTAEEPQEPKESP--VEIETRKAPVVSREEQYTEQLQAI 504
           +PTA EP   +E P  ++I T+   V+ RE+   E +Q +
Sbjct: 466 IPTALEPHYEREDPDFIDIRTKAREVLQREDDLNEIVQLV 505


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,650,887
Number of Sequences: 37544
Number of extensions: 703659
Number of successful extensions: 1623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 11
length of query: 753
length of database: 14,793,348
effective HSP length: 88
effective length of query: 665
effective length of database: 11,489,476
effective search space: 7640501540
effective search space used: 7640501540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)