GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000484-TA|BGIBMGA000484-PA|IPR002553|Adaptin, N-terminal
         (753 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           26   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.7  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           25   1.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   6.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   6.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 606 FGATLEFVVRD--CDPTTGLPDSNEGY 630
           F A ++  V+D  CDP   +PDS  GY
Sbjct: 522 FKANVKEAVKDTXCDPNYVVPDSEHGY 548


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 476  PKESPVEIETRKAPVVSREEQYTEQLQAIPGIEKLG 511
            P    + IE++ +P+V +    T  L  +  +EK G
Sbjct: 1205 PSAGDISIESKSSPLVYKRNINTYTLDGVGSVEKTG 1240


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 483 IETRKAPVVSREEQYTEQLQAIPGIEKLGPLFKSC 517
           ++T +A VVS  E   +  QA   +EKLG    SC
Sbjct: 90  MKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSC 124


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 504 IPGIEKLGPLFKSCEAIDLTEPETEYRVRCVKHIFARHLILQFECLNTLSDQLLEKVYVR 563
           +PG E L PL+K  + I+   P  E  + C K           E  N LS + L+ V + 
Sbjct: 312 LPGCEVLCPLYKYLQLIENVIPSNEELI-CDKRFVD-------ESANNLSIEELDFVKLN 363

Query: 564 LDSIPG 569
           L  I G
Sbjct: 364 LIRIAG 369


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 504 IPGIEKLGPLFKSCEAIDLTEPETEYRVRCVKHIFARHLILQFECLNTLSDQLLEKVYVR 563
           +PG E L PL+K  + I+   P  E  + C K           E  N LS + L+ V + 
Sbjct: 327 LPGCEVLCPLYKYLQLIENVIPSNEELI-CDKRFVD-------ESANNLSIEELDFVKLN 378

Query: 564 LDSIPG 569
           L  I G
Sbjct: 379 LIRIAG 384


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,072
Number of Sequences: 429
Number of extensions: 6523
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 753
length of database: 140,377
effective HSP length: 63
effective length of query: 690
effective length of database: 113,350
effective search space: 78211500
effective search space used: 78211500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)