Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000483-TA|BGIBMGA000483-PA|undefined
         (382 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.17 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.68 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.91 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.91 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.91 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.91 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   1.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   8.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 172  PSTNVTQMPFHACQRTNSNYS-WPSKTSSDYVTTRPCSTTPVPQQHTDAC 220
            PST+  Q P     R  S  + W +KT++   TTRP  TT V Q   D C
Sbjct: 1161 PSTSSWQKPTKPSYRPPSTTNHWQTKTTTS-TTTRP--TTTVSQLIDDKC 1207


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 287 PPPIRSHHQLLYVPY 301
           PPP+ +HH   Y PY
Sbjct: 165 PPPVYTHHYARYHPY 179


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 288 PPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQRA 347
           PP   ++Q  Y+P    +    H   Q     Y+  Q Y  +   +          Q  +
Sbjct: 32  PPSEEYNQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHS 91

Query: 348 HYSHPLQLQVK 358
           H+  P+  Q++
Sbjct: 92  HHGPPIHHQIR 102


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 288 PPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQRA 347
           PP   ++Q  Y+P    +    H   Q     Y+  Q Y  +   +          Q  +
Sbjct: 32  PPSEEYNQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHS 91

Query: 348 HYSHPLQLQVK 358
           H+  P+  Q++
Sbjct: 92  HHGPPIHHQIR 102


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 288 PPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQRA 347
           PP   ++Q  Y+P    +    H   Q     Y+  Q Y  +   +          Q  +
Sbjct: 32  PPSEEYNQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHS 91

Query: 348 HYSHPLQLQVK 358
           H+  P+  Q++
Sbjct: 92  HHGPPIHHQIR 102


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 288 PPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQRA 347
           PP   ++Q  Y+P    +    H   Q     Y+  Q Y  +   +          Q  +
Sbjct: 32  PPSEEYNQNSYIPPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHS 91

Query: 348 HYSHPLQLQVK 358
           H+  P+  Q++
Sbjct: 92  HHGPPIHHQIR 102


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 170 PSPSTNVTQMPFHACQRTNSNYSWPSKTSSDYVTTRPCSTTPVPQQHTDACY---AHSQN 226
           PSPS+  + +P    QRT++  S P+ +S   +T+  CS+ P    +    Y   A SQ 
Sbjct: 75  PSPSSTPSSLP---TQRTST--SNPTYSSRSVMTS--CSSVPTTASYGSDLYFPGATSQP 127

Query: 227 MASFAHYQQHR 237
               +H   H+
Sbjct: 128 PTDNSHVHHHQ 138


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 121 YGQESQPVSSDDEHDDYGFHR 141
           +G++ + +SSD+E+   G H+
Sbjct: 62  FGRKRKSISSDEENSFQGKHK 82


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.129    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,987
Number of Sequences: 317
Number of extensions: 3832
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 10
length of query: 382
length of database: 114,650
effective HSP length: 58
effective length of query: 324
effective length of database: 96,264
effective search space: 31189536
effective search space used: 31189536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)