Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000483-TA|BGIBMGA000483-PA|undefined
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    31   0.27 
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    29   0.83 
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    29   1.1  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    28   1.9  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    27   3.3  
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   5.8  

>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 148 IAIKQQLGASDDMLQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSDYVTTRPC 207
           ++   QL +SD +       LQ  PS+  +Q  F+A Q  +S    PSK S   +  RP 
Sbjct: 207 LSATNQLSSSDTL-----EPLQYPPSSFGSQRQFNASQ--DSPKRSPSKGSWSSILRRPS 259

Query: 208 STTPVPQQHTDACYAHSQNMASFAHYQQHRHH 239
            T    +Q T        N   F H   H+H+
Sbjct: 260 LTYSPKRQSTGLHRRSLTNYFKFPHRNAHQHN 291


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 168 LQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSDYV--TTRPCSTTPVPQQHTDACYAH-S 224
           L  +PST +T +      RTNS+ S  S T +D +       +TT     H DA  ++ S
Sbjct: 573 LSVTPSTAITNLSIPESNRTNSSASSKSFTMNDLILPPLHLKNTTQTNNAHEDAQSSNLS 632

Query: 225 QNMASFAHYQQHRHHENLYRNSCSLY 250
           QN + F      R    + + +  +Y
Sbjct: 633 QNHSLFYERIPQRPSYRIEKQNKGIY 658


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 197 TSSDYVTTRPCSTTPVPQQHT-DACY 221
           ++++YV T   S TP P +HT ++CY
Sbjct: 381 STTEYVNTESSSKTPAPHKHTFNSCY 406


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 111 APRTERIRQRYGQESQPVSSDDEHDDYGFHRRPAVRGIAIKQQLGASDDMLQQMQNELQP 170
           +P  E + + YG    P++  +E D YG  RR  V    +K  L    D   Q+Q    P
Sbjct: 118 SPNYEYLEENYGTIPVPLAYCNEKDRYGSQRRETV---PLKSALHELRDEQVQLQCRQAP 174

Query: 171 S 171
           S
Sbjct: 175 S 175


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/51 (23%), Positives = 29/51 (56%)

Query: 150 IKQQLGASDDMLQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSD 200
           I++++ + D  +++  ++L+   +  V Q+   A Q+T+ NY +  K  S+
Sbjct: 129 IREKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTDKNYDFAKKGFSN 179


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 122 GQESQPVSSDDEHDDYGFHRRPAVRGIAIKQQLGASDDMLQQMQNELQPSP 172
           G E+  VSSD+++DD     RP   G+   ++  + +  +     +L+  P
Sbjct: 30  GNENTSVSSDEKNDDPPLQARPPRLGLGASRKDQSENSWVTSKNEKLKSLP 80


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 174 TNVTQMPFHACQRTNSNYSWPSKT--SSDYVTTRPCSTT 210
           T  T +P+ +   T+SNY+  S T  +S  VTT  C+T+
Sbjct: 497 TTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTS 535



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 174 TNVTQMPFHACQRTNSNYSWPSKT--SSDYVTTRPCSTT 210
           T  T +P+ +   T+SNY+  S T  +S  VTT  C+T+
Sbjct: 556 TTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTS 594


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 185 QRTNSNYSWPSKTSSDY------VTTRPCSTTPVPQQHTDACYAHSQNMASFAHYQQHRH 238
           +R+NS +S P  T SD+      V+  P +  P  +       + +Q+ +SF+ Y Q   
Sbjct: 477 ERSNSTFSHPEPTRSDFSQAFTPVSDFPANLFPGSRNLFPTSNSGNQSTSSFSRYNQPTV 536

Query: 239 HENLYRNSCSL 249
             +L RNS  L
Sbjct: 537 SVDL-RNSSIL 546


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.129    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,378
Number of Sequences: 5004
Number of extensions: 59750
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 9
length of query: 382
length of database: 2,362,478
effective HSP length: 74
effective length of query: 308
effective length of database: 1,992,182
effective search space: 613592056
effective search space used: 613592056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)