Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000483-TA|BGIBMGA000483-PA|undefined
         (382 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.8  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 18/69 (26%), Positives = 26/69 (37%)

Query: 185 QRTNSNYSWPSKTSSDYVTTRPCSTTPVPQQHTDACYAHSQNMASFAHYQQHRHHENLYR 244
           +R    Y   SK  S   T R  S  P           H+ N  +  +Y  + ++ N Y 
Sbjct: 53  ERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYN 112

Query: 245 NSCSLYANV 253
           N   LY N+
Sbjct: 113 NYKKLYYNI 121


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 156 ASDDMLQQMQNELQPSPST-------NVTQMPFHACQRTNSNYSWPSKTSSDYVTTRPCS 208
           +S+ +  Q  + L P+ S+       N+ Q+         S+ S P+  ++   TT   +
Sbjct: 59  SSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTT 118

Query: 209 TTPVPQQHTDACYAHSQNMASFAHYQQHRHH 239
            T      T A     Q      H+ Q+ HH
Sbjct: 119 ATAAATATTTATGLIKQETLQRHHHLQNHHH 149



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 170 PSPSTNVTQMPFHACQRTNSNYSWPSKTSSDYVTTRPCSTTPVPQQHTDAC-YAHSQNMA 228
           P P  N+ Q+         S+ S P+  ++   TT   + T      T A      + + 
Sbjct: 81  PVPG-NLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQ 139

Query: 229 SFAHYQQHRHH 239
              H Q H HH
Sbjct: 140 RHHHLQNHHHH 150


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 136 DYGFHRRPAVRGIAIKQQLGASDDMLQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPS 195
           +Y   R PA   I             QQ Q + Q   S++   M  ++   ++  Y   +
Sbjct: 775 NYSTTRWPATSVITTTTGARQQQQQQQQQQQQQQQQQSSSDYLMVGNS-PASSPRYLSAA 833

Query: 196 KTSSDYVTTRPCSTT 210
            TSS   + RP S+T
Sbjct: 834 ATSSTSTSPRPASST 848


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.129    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,415
Number of Sequences: 429
Number of extensions: 4512
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 382
length of database: 140,377
effective HSP length: 59
effective length of query: 323
effective length of database: 115,066
effective search space: 37166318
effective search space used: 37166318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)