Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000483-TA|BGIBMGA000483-PA|undefined
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 40 0.003
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 36 0.041
01_05_0421 + 21990034-21990392,21991691-21992681 36 0.054
06_03_1126 + 27805982-27806475,27806617-27807202 35 0.13
02_01_0564 - 4136114-4136566,4136977-4137047,4137197-4137275,413... 31 2.0
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 30 2.7
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 30 3.6
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 29 6.2
12_02_0466 + 19403855-19404347,19404359-19404582,19404659-194050... 29 8.2
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 29 8.2
01_05_0525 + 22928295-22928492,22929435-22929584,22929679-229298... 29 8.2
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 39.9 bits (89), Expect = 0.003
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 274 PVRAAPRCRRPESPPPIRSHHQLL---YVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQ 330
P +A P +P P I HHQ++ P H QQH AQ Y +MQ Y+Q
Sbjct: 391 PTQATPSEVQPHVQPHIPQHHQVMAQQQQPQLQHLPQQQHPNAQ--QQSYPQMQAYHQPP 448
Query: 331 GRSATSTPQPVAHQQRAHYS 350
S P H H S
Sbjct: 449 PMSHAQPQNPSVHAVTGHQS 468
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 36.3 bits (80), Expect = 0.041
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 285 ESPPPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNR-MQTYYQHQGRSATSTPQPVAH 343
+S P ++HHQ Y H+H QQ+E+ ++R Q Y QHQ + Q
Sbjct: 142 DSFPLQQNHHQ----QYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQ 197
Query: 344 QQRAHYSHPLQLQ 356
QQ+ + LQ Q
Sbjct: 198 QQQQYQHQNLQQQ 210
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 35.9 bits (79), Expect = 0.054
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 286 SPPPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDY-----NRMQTYYQHQGRSATSTPQP 340
SPPP+ +HHQ L Q H+ SP+ + R Q Q+ G + P
Sbjct: 168 SPPPVMAHHQEL-AALQEQQQQQHHQDVMQSPHQHQQQQQQRQQLVQQNCGYAVKPEMAP 226
Query: 341 VAHQQRAHYSHPLQLQVKITVGPTGEVQISVTPKPHDTAEKP 382
+ HPL LQ Q S T P T + P
Sbjct: 227 WPTTMPYDHHHPL-LQPLCNANAAATAQSSATSAPPTTPQLP 267
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 34.7 bits (76), Expect = 0.13
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 111 APRTERIRQRYGQESQPVSSDDEHDDYGFHRRPAVRGIAIKQQLGASDDMLQQMQNELQP 170
A R R R R + S VSSD+ F+R PA + D L ++L+P
Sbjct: 112 AGRHARSRSRSTKSSSVVSSDEFGAGPAFYR-PAAASSGCR----GGDATLSSFASKLRP 166
Query: 171 SPSTNVTQMPFHACQRTNSNYSWPSKTSSDYVTTRPCSTTPVPQQHT------DACYAHS 224
+P +R +S+ + T DY ++ CST P A HS
Sbjct: 167 ------IAIP---SRRYDSSPPSTASTRCDYQSSFTCSTAAYPASRCYYYAGRTAATNHS 217
Query: 225 QNMASFAHYQQHRHHENLYRNSCSLYAN 252
+S A QQHRHH C +N
Sbjct: 218 SAASSHAAAQQHRHHHRGGGGFCCFTSN 245
>02_01_0564 -
4136114-4136566,4136977-4137047,4137197-4137275,
4137380-4137535,4137867-4137938,4138081-4138161,
4138237-4138302,4138482-4138547,4138648-4138698,
4138982-4139109,4139239-4139377,4139606-4139643,
4139679-4139748,4140194-4140277
Length = 517
Score = 30.7 bits (66), Expect = 2.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 214 QQHTDACYAHSQNMASFAHYQQHRHHENLY 243
QQH H Q H+Q H+HH N+Y
Sbjct: 432 QQHQYYQSQHQQQYYQPHHFQDHQHHHNMY 461
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 30.3 bits (65), Expect = 2.7
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 161 LQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSDYVT--TRPCSTTPVPQQHTD 218
L + + P P + P Q + +SWP KT++ VT TR + P+QH +
Sbjct: 320 LPESERPTPPPPPPPLPPTP--VAQHKRTEFSWPPKTTAPAVTLLTRAPPLSSAPKQHPE 377
Query: 219 A 219
+
Sbjct: 378 S 378
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.9 bits (64), Expect = 3.6
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 285 ESPPPIRSHHQLLYVPYNAHYHYQQHE-----YAQWSPNDYNRMQTYYQ-HQGRSATSTP 338
E+ P+RS +Q + +++H Q H + Q S + Y+ Q ++Q + GR +
Sbjct: 616 ETHQPLRSRNQDYHWEDQSYHHQQNHHQNYYGHRQMSQDQYHHQQNHHQNYHGRQGMNGN 675
Query: 339 QPVAHQQRAHYSHP 352
Q H ++ H +P
Sbjct: 676 Q--YHDRQNHNQNP 687
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 29.1 bits (62), Expect = 6.2
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 112 PRTERIRQRYGQESQP---VSSDDEHDDYGFHRRPAVRGIAIKQQLGASDDMLQQMQNEL 168
P T I+Q G+ + V D H D G + A + AS D Q ++
Sbjct: 612 PYTAEIQQENGKHEEDNDIVKPSDSHGDGGISEQFAGMVEDSRTTGMASPD---QFMKQI 668
Query: 169 QPSPSTNVTQMPFHACQRTNSNYSWPSKTSSDYVTTRPCSTTPVPQQHTDACYAHSQNM 227
T VT + HA R+N ++T+ D + TT P+ T+ H QN+
Sbjct: 669 -----TEVTSIDVHASDRSNVVDQSVTQTNDDTSSNTASETTQTPETFTEG--EHHQNL 720
>12_02_0466 +
19403855-19404347,19404359-19404582,19404659-19405093,
19405180-19406024,19406353-19406635,19406903-19406977
Length = 784
Score = 28.7 bits (61), Expect = 8.2
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 275 VRAAPRCRRPESPPPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSA 334
+ PR PPP R H ++ +P Q+ E+ Q + T + G
Sbjct: 471 INITPRPAPSSRPPPTRLHQTVVSLPPAVE---QRDEHLQL------QYDTDFGDDGMEV 521
Query: 335 TSTPQ---PVAHQQRAHYSHP-LQLQVKITVGPTGEVQISVTPKPHDTAEKP 382
S P P +RA S P L + K G++++ + PK D + P
Sbjct: 522 DSRPHLPPPAKRSKRAKSSPPKLDTRKKAAGTGRGKIKVPLAPKKLDLGKAP 573
>12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.7 bits (61), Expect = 8.2
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Query: 126 QPVSSDD---EHDDYGFHRRPAVRGIAIKQQLGASDDMLQQMQNELQPSPSTNVTQMPFH 182
QP+ +D+ + + GFHR I IK + +M+ + L + + +MP
Sbjct: 899 QPIINDEILVDLNTSGFHRLSETEDILIKNH---NMEMVAD-NDHLSTNLCLSDIEMPSD 954
Query: 183 ACQRTNSNYSWPSKTSSDYVTTRPCSTTPVPQQHTDACYAHSQNMASFAHYQQHRHHENL 242
A + + + S+ KT D T C T + +D M S A Q + EN
Sbjct: 955 ALESSAAEESYIPKTEEDTSTKAHCYTISTLEHPSDENNFDDLQMQSEA--VQSSNEENK 1012
Query: 243 YRNSCSL 249
C+L
Sbjct: 1013 SNGCCTL 1019
>01_05_0525 +
22928295-22928492,22929435-22929584,22929679-22929813,
22929914-22929979,22931704-22931793,22932414-22932495,
22932703-22932908
Length = 308
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/61 (24%), Positives = 22/61 (36%)
Query: 190 NYSWPSKTSSDYVTTRPCSTTPVPQQHTDACYAHSQNMASFAHYQQHRHHENLYRNSCSL 249
N WPSK V + T P+ +Q T+ A A N+ ++ C
Sbjct: 242 NKIWPSKMPKFIVKPKSTPTDPIKKQKTETTAGPDTGKAPVAEENSEPAQNNVLQSLCQN 301
Query: 250 Y 250
Y
Sbjct: 302 Y 302
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.129 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,412,125
Number of Sequences: 37544
Number of extensions: 409681
Number of successful extensions: 1320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 28
length of query: 382
length of database: 14,793,348
effective HSP length: 83
effective length of query: 299
effective length of database: 11,677,196
effective search space: 3491481604
effective search space used: 3491481604
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -