Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000483-TA|BGIBMGA000483-PA|undefined
(382 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 32 0.56
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica... 31 1.3
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica... 31 1.3
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica... 31 1.3
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 31 1.3
At4g26330.1 68417.m03786 subtilase family protein contains simil... 30 2.2
At1g34575.1 68414.m04297 FAD-binding domain-containing protein s... 30 2.2
At5g63720.1 68418.m07998 hypothetical protein 30 3.0
At1g55080.1 68414.m06291 expressed protein 30 3.0
At5g57660.1 68418.m07205 zinc finger (B-box type) family protein... 29 3.9
At5g16920.1 68418.m01983 expressed protein 29 3.9
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 29 3.9
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 29 3.9
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi... 29 3.9
At5g66370.1 68418.m08368 hypothetical protein similar to unknown... 29 5.2
At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein / ... 29 5.2
At2g11090.1 68415.m01187 expressed protein 29 5.2
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 29 6.9
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 29 6.9
At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4) 29 6.9
At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4) 29 6.9
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s... 29 6.9
At4g15180.1 68417.m02328 SET domain-containing protein contains ... 28 9.1
At3g50370.1 68416.m05508 expressed protein 28 9.1
At2g43970.2 68415.m05468 La domain-containing protein contains P... 28 9.1
At2g43970.1 68415.m05467 La domain-containing protein contains P... 28 9.1
At2g35230.2 68415.m04322 VQ motif-containing protein contains PF... 28 9.1
At2g35230.1 68415.m04321 VQ motif-containing protein contains PF... 28 9.1
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 28 9.1
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 32.3 bits (70), Expect = 0.56
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 293 HHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQRAHYSHP 352
HH + P+ H+ + PN YN +Q Q ++ T PQP Q H S P
Sbjct: 9 HHPPQFTPFP---HFPTSNHHPLGPNPYNN-HVVFQPQPQTQTQIPQPQMFQLSPHVSMP 64
>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1150
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 278 APRCRRPESPPPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATST 337
AP + P+ P + QL + +++ H QQ +Q +Q Q Q + ++
Sbjct: 488 APMSQLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQQQQQQLLQQQQQLQSQQHSNN 547
Query: 338 PQPVAHQQRAHYSHPLQLQVK 358
Q + QQ+ Q Q++
Sbjct: 548 NQSQSQQQQQLLQQQQQQQLQ 568
>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1164
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 278 APRCRRPESPPPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATST 337
AP + P+ P + QL + +++ H QQ +Q +Q Q Q + ++
Sbjct: 487 APMSQLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQQQQQQLLQQQQQLQSQQHSNN 546
Query: 338 PQPVAHQQRAHYSHPLQLQVK 358
Q + QQ+ Q Q++
Sbjct: 547 NQSQSQQQQQLLQQQQQQQLQ 567
>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
to auxin response factor 7 GI:4104929 from [Arabidopsis
thaliana]
Length = 1165
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 278 APRCRRPESPPPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATST 337
AP + P+ P + QL + +++ H QQ +Q +Q Q Q + ++
Sbjct: 488 APMSQLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQQQQQQLLQQQQQLQSQQHSNN 547
Query: 338 PQPVAHQQRAHYSHPLQLQVK 358
Q + QQ+ Q Q++
Sbjct: 548 NQSQSQQQQQLLQQQQQQQLQ 568
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 285 ESPPPIRSHHQLLYVPYNAHYHYQQHEYAQWS-PNDYNRMQTYYQHQGRSATSTPQPVAH 343
+ PPP +S HQ Y P Y Q Q P+ YN + Y Q QP +H
Sbjct: 315 QPPPPTQSLHQPPYQPPPQQPQYPQQPPPQLQHPSGYNPEEPPYPQQSYPPNPPRQPPSH 374
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 154 LGASDDMLQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSDYVTTRPCSTT 210
+G +D ++ M L P PST T +P H+ RTN+++++PS T TR T
Sbjct: 608 IGYTDQEIKSMV--LHPEPST--TCLPSHS-YRTNADFNYPSITIPSLRLTRTIKRT 659
>At1g34575.1 68414.m04297 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 286 SPPPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQ 345
+PP ++ + Q Y Q +PN + Y ++ +T +PVA
Sbjct: 24 APPKLKDSFTQCVTVFKPSVPIQNFTYTQQNPNFLTILNNYVRNLRYFNGTTRKPVAIVA 83
Query: 346 RAHYSHPLQLQVKITVGPTGEVQISVTPKPHD 377
AH++H +Q I +Q+ + HD
Sbjct: 84 AAHFTH---IQATINCAKKLGLQLRIRSGGHD 112
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 29.9 bits (64), Expect = 3.0
Identities = 10/56 (17%), Positives = 29/56 (51%)
Query: 301 YNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQRAHYSHPLQLQ 356
++ H+H+ H + + P+ +N++Q+ + H+ + + + + + +H Q Q
Sbjct: 370 HHHHHHHHHHHHDKEKPSAWNKLQSKFHHKHQEKSKERKRPMSESKGLTTHKQQHQ 425
>At1g55080.1 68414.m06291 expressed protein
Length = 244
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 309 QHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQRAHYSHPLQLQ 356
Q + Q+ P MQ Y Q Q + Q QQR S PLQ Q
Sbjct: 61 QQQQQQFQPQQQQEMQQYQQFQQQQHFIQQQQFQQQQRLLQSPPLQPQ 108
>At5g57660.1 68418.m07205 zinc finger (B-box type) family protein
contains Pfam domain, PF00643: B-box zinc finger
Length = 355
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 153 QLGASDDMLQQMQNELQPSPSTNVTQ-MPFHACQRTNSNYSWPSKTSSDYVTTRPCSTTP 211
Q A D L +Q + +P P TN C+ S +++PS++ S V+T
Sbjct: 195 QNNAGGDSLVPVQTKTEPLPLTNNDHCFDIDFCRSKLSAFTYPSQSVSHSVSTSSIEYGV 254
Query: 212 VPQQHTD 218
VP +T+
Sbjct: 255 VPDGNTN 261
>At5g16920.1 68418.m01983 expressed protein
Length = 256
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 158 DDMLQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSDYVTTRPCSTT 210
D +LQ SP N T +PF +C +++N S +SD ++RP T
Sbjct: 161 DGILQSPSTVDDDSPRNNHT-LPFISCPSSHNNSDQNSHNNSDQNSSRPADHT 212
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 29.5 bits (63), Expect = 3.9
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 141 RRPAVRGIAIKQQLGASDDMLQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSD 200
+ P R K QL A++ LQ+ + PS ++ P H+ T + + S +SS
Sbjct: 17 KNPPPRDRQDKPQLTANNGGLQRRPRAAKNVPSRYLSPSPSHSTTTTTTTATSTSTSSSS 76
Query: 201 YVTTRPCSTTPVP 213
V R P P
Sbjct: 77 SVILRSSKRYPSP 89
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 29.5 bits (63), Expect = 3.9
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 141 RRPAVRGIAIKQQLGASDDMLQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSD 200
+ P R K QL A++ LQ+ + PS ++ P H+ T + + S +SS
Sbjct: 17 KNPPPRDRQDKPQLTANNGGLQRRPRAAKNVPSRYLSPSPSHSTTTTTTTATSTSTSSSS 76
Query: 201 YVTTRPCSTTPVP 213
V R P P
Sbjct: 77 SVILRSSKRYPSP 89
>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1141
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 192 SWPSKTSSDYVTTRPCSTTPVPQQHTDACYAHSQNMASFAH------YQQHRHHENLYRN 245
++P SS T+ QQHT + H +M+S +H +Q H+HH+++Y++
Sbjct: 1016 TFPGIDSSTLANTQGFREDQSQQQHTPSPSKH--HMSSLSHQFHQSIHQSHQHHQSIYQS 1073
>At5g66370.1 68418.m08368 hypothetical protein similar to unknown
protein (emb CAB62624.1)
Length = 150
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 295 QLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQP--VAHQQRAHYSHP 352
++ +V H+H+ QH Y PN + +YY + P + Q +YS
Sbjct: 73 EMTFVKTGGHHHHHQHHYPH-EPNLHYNSDSYYGQPPSYNSYWPSDNCYSRQHPPYYSQS 131
Query: 353 LQLQ 356
L +Q
Sbjct: 132 LAMQ 135
>At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein /
anther-specific protein (A6) identical to probable
glucan endo-1,3-beta-glucosidase A6 precursor SP:Q06915
from [Arabidopsis thaliana]
Length = 478
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 302 NAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQ 339
N+++ H Y +WS N N + QG S + PQ
Sbjct: 209 NSYFFLNVHPYFRWSRNPMNTSLDFALFQGHSTYTDPQ 246
>At2g11090.1 68415.m01187 expressed protein
Length = 151
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 194 PSKTSSDYVTTRPCSTTPVPQQHT 217
PS S D+ TT+P +T P+ + HT
Sbjct: 78 PSSPSLDHSTTKPSTTIPITRLHT 101
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 279 PRCRRPESPPPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTP 338
P + P S P S Q+ Y PY +YH Q+ Y Q +P + T Y H G + P
Sbjct: 59 PPAQPPSSSQPPPS--QISYRPYGQNYHQNQY-YPQQAPPYF----TGYHHNGFNPMMRP 111
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 28.7 bits (61), Expect = 6.9
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 285 ESPPPIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQ 344
+SP P S H + ++ H+H+ H + + ++ + + S ++P P +
Sbjct: 319 KSPSPSPSPHSKHHHHHHHHHHHHHHHHHNHHHHHHHNLSPKMAPE-VSPVASPAPHRSR 377
Query: 345 QRAHYSHPLQLQVKITVGPTGEVQISVTPKPHDTAEKP 382
+RA + P VQ S TP P +A P
Sbjct: 378 KRAPSAPPPCNPGNRVHFKEKRVQFSSTPAPAPSAGAP 415
>At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 158 DDMLQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSDY-VTTRPCSTTPVPQQH 216
++M QQ E + + N Q Q+TN+N + P+ +++ V T TT H
Sbjct: 488 EEMYQQEAKEREEAEEENENQQQQRRQQQTNNNDTKPNNNENNFTVITAQTPTTMTSTHH 547
Query: 217 -TDACYAHSQNMAS 229
D+ + S AS
Sbjct: 548 ENDSSFLSSVAAAS 561
>At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 28.7 bits (61), Expect = 6.9
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 158 DDMLQQMQNELQPSPSTNVTQMPFHACQRTNSNYSWPSKTSSDY-VTTRPCSTTPVPQQH 216
++M QQ E + + N Q Q+TN+N + P+ +++ V T TT H
Sbjct: 488 EEMYQQEAKEREEAEEENENQQQQRRQQQTNNNDTKPNNNENNFTVITAQTPTTMTSTHH 547
Query: 217 -TDACYAHSQNMAS 229
D+ + S AS
Sbjct: 548 ENDSSFLSSVAAAS 561
>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
similar to putative variable cytadhesin protein
(GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
PF02891: MIZ zinc finger domain
Length = 842
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 285 ESPPPIRSHHQLLYV--PYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQP-- 340
+SP P + Y+ P H +Y ++ +W P+ QT + G + P P
Sbjct: 557 QSPSPAQQRPVPSYIAHPQTFHVNYGENADQRWMPSSIAHPQTLPVNYGGNTNQRPIPSS 616
Query: 341 VAHQQ 345
+AH Q
Sbjct: 617 IAHPQ 621
>At4g15180.1 68417.m02328 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 2326
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 182 HACQRTNSNYSWPSKTSSDYVTTRPCSTTPVPQQHTDACYAHSQNMASFAHYQQHRHHEN 241
H+ +R + S+PSK SS R P + + HS + + ++ + + R+HEN
Sbjct: 383 HSAERLYRD-SYPSKNSSLEKYPRKHQDASFPAKAFSDKHGHSPSRSDWSPHDRSRYHEN 441
Query: 242 LYRN 245
R+
Sbjct: 442 RDRS 445
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 214 QQHTDACYAHSQNMASFAHYQQHRHHEN 241
QQ + SQ++ +H+ QH+HH+N
Sbjct: 2101 QQSSQEKNTQSQHVGGPSHHHQHQHHQN 2128
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 28.3 bits (60), Expect = 9.1
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 289 PIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQRAH 348
P+++HH + ++ H+H+ +H+ Q+ P R YQ +G + ++
Sbjct: 107 PVQNHHP--HHRFHQHHHHNRHQNQQYVP---VRNHGEYQQRGGVGGEQEPDLVSKKNDR 161
Query: 349 YSHPLQLQVKITVGPTG-EVQI-SVTPKPHDTAEK 381
H + V TG V I S T P D+ +K
Sbjct: 162 RDHSKRESKNDQVTETGASVSIDSKTGLPEDSIQK 196
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 28.3 bits (60), Expect = 9.1
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 289 PIRSHHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQHQGRSATSTPQPVAHQQRAH 348
P+++HH + ++ H+H+ +H+ Q+ P R YQ +G + ++
Sbjct: 107 PVQNHHP--HHRFHQHHHHNRHQNQQYVP---VRNHGEYQQRGGVGGEQEPDLVSKKNDR 161
Query: 349 YSHPLQLQVKITVGPTG-EVQI-SVTPKPHDTAEK 381
H + V TG V I S T P D+ +K
Sbjct: 162 RDHSKRESKNDQVTETGASVSIDSKTGLPEDSIQK 196
>At2g35230.2 68415.m04322 VQ motif-containing protein contains
PF05678: VQ motif
Length = 295
Score = 28.3 bits (60), Expect = 9.1
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 285 ESPPPIRSHHQLLYVPYNAHYHYQQ-HEYAQWSPNDYNRMQTYYQHQGRSATS-TPQPVA 342
E P I H Q YVP N Y +E + P R Q Q +S PQP
Sbjct: 70 EQRPYIPGHEQRPYVPGNEQQPYMPGNEQRPYIPGHEQRSYMPAQSQSQSQPQPQPQPQQ 129
Query: 343 H-----QQRAHYSHPLQ 354
H Q R + PLQ
Sbjct: 130 HMMPGPQPRMNMQGPLQ 146
>At2g35230.1 68415.m04321 VQ motif-containing protein contains
PF05678: VQ motif
Length = 402
Score = 28.3 bits (60), Expect = 9.1
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 285 ESPPPIRSHHQLLYVPYNAHYHYQQ-HEYAQWSPNDYNRMQTYYQHQGRSATS-TPQPVA 342
E P I H Q YVP N Y +E + P R Q Q +S PQP
Sbjct: 177 EQRPYIPGHEQRPYVPGNEQQPYMPGNEQRPYIPGHEQRSYMPAQSQSQSQPQPQPQPQQ 236
Query: 343 H-----QQRAHYSHPLQ 354
H Q R + PLQ
Sbjct: 237 HMMPGPQPRMNMQGPLQ 253
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 293 HHQLLYVPYNAHYHYQQHEYAQWSPNDYNRMQTYYQ 328
H Q ++V N H+H+ H + W P+ +Y Q
Sbjct: 344 HDQSMFV--NDHHHHHHHHHQNWVPDSMFGQTSYNQ 377
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.129 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,995,352
Number of Sequences: 28952
Number of extensions: 306944
Number of successful extensions: 893
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 48
length of query: 382
length of database: 12,070,560
effective HSP length: 82
effective length of query: 300
effective length of database: 9,696,496
effective search space: 2908948800
effective search space used: 2908948800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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