Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000482-TA|BGIBMGA000482-PA|undefined
         (239 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50328| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_59466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_56953| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_50338| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)               28   6.0  
SB_48725| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_45955| Best HMM Match : SMC_hinge (HMM E-Value=2)                   28   6.0  
SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)               28   6.0  

>SB_50328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 76  YQEPEPGALSPPEGYKDMSLFNRDGTL--REQAWWEAGDVVLVGERSG 121
           YQEP+ G   P  GY++  L  R+  L  RE  W     + L G R G
Sbjct: 70  YQEPDLGYREPDLGYREPDLGYREPDLGYREPDWVTGTQIGLPGTRFG 117


>SB_59466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 13/43 (30%)

Query: 146 CAD--CDAHAALHQPLGE-SPLPRPC-------QGRTQSCRPC 178
           C D  C  H   HQ L + SPLP PC       Q  T+SCRPC
Sbjct: 22  CMDTYCKVH---HQRLRKGSPLPVPCKICGIGTQSETRSCRPC 61


>SB_56953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 146 CADCDAHAALHQPLGESPLPRPC-------QGRTQSCRPCSHILNFM 185
           C D      L + L  SPLP PC       Q  T+ CRPC    N +
Sbjct: 30  CIDTYCKVHLQRLLKGSPLPVPCKICGIGTQSETRLCRPCGANRNIL 76


>SB_50338| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
          Length = 374

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 9/47 (19%)

Query: 164 LPRPCQ-GRTQS-------CRPCSHILNFMFTKLC-VFSTFLRGSTC 201
           L +PC+ GRT S       C PC H   F+ TK C   S  +  +TC
Sbjct: 94  LCKPCEAGRTYSDGEGIGSCNPCGHCDGFVTTKNCTTHSNIVCSTTC 140


>SB_48725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 76  YQEPEPGALSPPEGYKDMSLFNR--DGTLREQAWWEAGDVVLVGERSG 121
           Y+EP+ G   P  GY++  L  R  D   R Q W     + + G + G
Sbjct: 59  YREPDLGYREPDLGYREPDLGYREPDWVTRNQIWVTRNQIWVTGNQIG 106


>SB_45955| Best HMM Match : SMC_hinge (HMM E-Value=2)
          Length = 665

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 146 CADCDAHAALHQPLGESPLPRPC-------QGRTQSCRPC 178
           C D      L + L  SPLP PC       Q  T+ CRPC
Sbjct: 73  CIDTYCKVHLQRLLKGSPLPVPCKICGIGTQSETRLCRPC 112


>SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
          Length = 331

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 9/47 (19%)

Query: 164 LPRPCQ-GRTQS-------CRPCSHILNFMFTKLC-VFSTFLRGSTC 201
           L +PC+ GRT S       C PC H   F+ TK C   S  +  +TC
Sbjct: 149 LCKPCEAGRTYSDGEGIGSCNPCGHCDGFVTTKNCTTHSNIVCSTTC 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.138    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,277,047
Number of Sequences: 59808
Number of extensions: 249176
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 22
length of query: 239
length of database: 16,821,457
effective HSP length: 80
effective length of query: 159
effective length of database: 12,036,817
effective search space: 1913853903
effective search space used: 1913853903
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)