GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000482-TA|BGIBMGA000482-PA|undefined
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1612 + 34773218-34773414,34773655-34773738,34773871-347739...    29   4.4  
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639...    29   4.4  
02_05_0379 - 28454026-28454325,28454416-28454631,28454729-284549...    28   7.7  

>04_04_1612 +
           34773218-34773414,34773655-34773738,34773871-34773944,
           34774312-34774388,34774491-34774527,34774691-34774776,
           34775048-34775107,34775216-34775361,34775780-34775906,
           34776164-34776319,34776409-34776519,34776725-34776835,
           34777040-34777138,34777316-34777444
          Length = 497

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 191 VFSTFLRGSTCFATDKHGKPYRGLP 215
           + STF+ G+  FA DKH K   G P
Sbjct: 469 ILSTFVGGNLVFAEDKHAKAACGAP 493


>03_02_0205 +
           6389343-6389609,6390418-6390486,6390662-6390757,
           6391120-6391244,6391331-6391483,6392863-6392992,
           6393122-6393282,6393660-6393702,6393869-6394042,
           6394471-6394525,6394567-6394746,6396234-6396339,
           6396448-6396506,6397419-6397541,6397825-6397919
          Length = 611

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 153 AALHQPLGESPLPRPCQGRTQSCRPCSHILNFM---FTKLCVFSTFLRGSTCFATDKHGK 209
           AAL  P   +P P P        R  S +L F      +  + + F RGS   A ++ GK
Sbjct: 3   AALIVPANPNPTPNPTSSLRPPSRAASSVLRFPRRDRARTHLTAAFGRGSPAAAAERGGK 62

Query: 210 PY 211
            Y
Sbjct: 63  DY 64


>02_05_0379 -
           28454026-28454325,28454416-28454631,28454729-28454935,
           28455024-28455074
          Length = 257

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 159 LGESPLPRPCQGRTQSCRPCSHIL--NFMFTKL 189
           L E P PRP +G T +C  C   L  +F F  L
Sbjct: 123 LNERPQPRPGKGVTNTCEVCERSLLDSFRFCSL 155


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.138    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,298,403
Number of Sequences: 37544
Number of extensions: 227133
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 3
length of query: 239
length of database: 14,793,348
effective HSP length: 80
effective length of query: 159
effective length of database: 11,789,828
effective search space: 1874582652
effective search space used: 1874582652
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)