GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000482-TA|BGIBMGA000482-PA|undefined
         (239 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164151-1|AAD47075.1|  148|Anopheles gambiae translation initia...    27   0.65 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   6.0  

>AF164151-1|AAD47075.1|  148|Anopheles gambiae translation
           initiation factor 4C (1A) protein.
          Length = 148

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 100 GTLREQAWWEAGDVVLVGER 119
           G LR++ W   GD++L+G R
Sbjct: 63  GKLRKKVWINQGDIILIGLR 82


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 162  SPLPRPCQGRTQSCRPCSHILN 183
            SP P     R QS  P  HILN
Sbjct: 1465 SPTPSKKSKRHQSASPIRHILN 1486


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.138    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,305
Number of Sequences: 2123
Number of extensions: 7925
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 239
length of database: 516,269
effective HSP length: 62
effective length of query: 177
effective length of database: 384,643
effective search space: 68081811
effective search space used: 68081811
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)