GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000482-TA|BGIBMGA000482-PA|undefined
         (239 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78015-7|CAB01438.1|  381|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z77657-10|CAB01152.1|  381|Caenorhabditis elegans Hypothetical p...    27   9.1  
AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z78015-7|CAB01438.1|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.9 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 96  FNRDGTLREQAWWEAGDVVLVGE 118
           +N DGT    +WW AG+  L G+
Sbjct: 100 YNNDGTTPYSSWWIAGEPSLNGD 122


>Z77657-10|CAB01152.1|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.9 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 96  FNRDGTLREQAWWEAGDVVLVGE 118
           +N DGT    +WW AG+  L G+
Sbjct: 100 YNNDGTTPYSSWWIAGEPSLNGD 122


>AF099920-3|AAK29845.1|  216|Caenorhabditis elegans Hypothetical
           protein H06H21.3 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 100 GTLREQAWWEAGDVVLVGER 119
           G LR++ W   GD++LVG R
Sbjct: 63  GKLRKKVWINVGDIILVGLR 82


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.138    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,202,381
Number of Sequences: 27539
Number of extensions: 184064
Number of successful extensions: 231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 3
length of query: 239
length of database: 12,573,161
effective HSP length: 79
effective length of query: 160
effective length of database: 10,397,580
effective search space: 1663612800
effective search space used: 1663612800
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)