GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000481-TA|BGIBMGA000481-PA|IPR013766|Thioredoxin domain,
IPR006863|Erv1/Alr, IPR012336|Thioredoxin-like fold,
IPR006662|Thioredoxin-related
         (594 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    25   1.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   1.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   1.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   2.6  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   4.5  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   5.9  

>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 415 HTLTVNAAQKPGSEGPKVLKAMHGYVKNFFGCTECASHFQAMAARNR 461
           H  T+ +    G +  KVLK++H +  N     E   HF + +  +R
Sbjct: 220 HNETIYSLTPQGRKEQKVLKSLHSFSNNVI--AERKKHFSSSSYSSR 264


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 442 NFFGCTECASHFQAMAARNRIFDVKENNK 470
           N F C  CA  F+    RNR +  K  ++
Sbjct: 51  NIFACDGCAGFFKRSIRRNRQYVCKAKDE 79


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 442 NFFGCTECASHFQAMAARNRIFDVKENNK 470
           N F C  CA  F+    RNR +  K  ++
Sbjct: 51  NIFACDGCAGFFKRSIRRNRQYVCKAKDE 79


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 463 FDVKENNKAVLWLWISHNEVN 483
           FD   N K + WL  SHN ++
Sbjct: 289 FDTFRNTKKLQWLDTSHNRIS 309


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 354 IMDLHATLAARNSWTGGEVYDLVKRLETAHEPVY 387
           I+++   +A R   T G++ +L+  L T + PV+
Sbjct: 246 ILNVLKKIALRRQTTNGDLDELIVTLSTHYFPVF 279


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 418 TVNAAQKPGSEGPKVLKAMHGYVKNFFGCTECASHFQAMAARNR 461
           T+ +    G +  KVLK++H +  N     E   HF + +  +R
Sbjct: 223 TIYSLTPQGRKEQKVLKSLHSFSNNVI--AERKKHFSSSSYSSR 264


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,558
Number of Sequences: 317
Number of extensions: 5465
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 594
length of database: 114,650
effective HSP length: 61
effective length of query: 533
effective length of database: 95,313
effective search space: 50801829
effective search space used: 50801829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)