GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000481-TA|BGIBMGA000481-PA|IPR013766|Thioredoxin domain,
IPR006863|Erv1/Alr, IPR012336|Thioredoxin-like fold,
IPR006662|Thioredoxin-related
         (594 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    37   0.001
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    25   5.7  
DQ974172-1|ABJ52812.1|  409|Anopheles gambiae serpin 13 protein.       25   5.7  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 45  NKNFEKKLYGQNNALLV-QFYNSYCGHCRAFSPKYKALASDIARWKKVIKLAVIDCFVEE 103
           +++F  KL    + L+V  F+ ++CG C+  +PK +   +     K   K+ V+   V+E
Sbjct: 8   SEDFNNKLEAAGDQLVVVDFFATWCGPCKVIAPKLEEFQN-----KYADKIVVVKVDVDE 62

Query: 104 NSEICRQFEVMAYPSIRY 121
             E+  Q+ + + P+  +
Sbjct: 63  CEELAAQYNIASMPTFLF 80


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 125 NYMKSNSNVGEKMNIADTAERLKNQLIIKLQAEQ 158
           NY  SNS++   ++I D    L ++L  KLQ ++
Sbjct: 759 NYTLSNSSLSRVLSIRDLGIILDSRLNFKLQLDE 792


>DQ974172-1|ABJ52812.1|  409|Anopheles gambiae serpin 13 protein.
          Length = 409

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 255 QPTAQNILEEIDRFLKSKNYVFPPKYANMNDISDSSQQRTFV 296
           Q T  N+ + I R L  +N +F P  AN N + DSS    ++
Sbjct: 266 QTTIYNMTQSIRR-LGLQN-LFEPNVANFNGLQDSSTSNLYL 305


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,648
Number of Sequences: 2123
Number of extensions: 22833
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 3
length of query: 594
length of database: 516,269
effective HSP length: 68
effective length of query: 526
effective length of database: 371,905
effective search space: 195622030
effective search space used: 195622030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)