GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000481-TA|BGIBMGA000481-PA|IPR013766|Thioredoxin domain,
IPR006863|Erv1/Alr, IPR012336|Thioredoxin-like fold,
IPR006662|Thioredoxin-related
         (594 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   1.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   9.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 413 LFHTLTVNAAQKPGSEGPKVLKAMHGYVKNFFGCTECASHFQ 454
           LF ++ V AA +PG    ++++ MH  ++N        +H Q
Sbjct: 339 LFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQNHPQ 380


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)

Query: 461 RIFDVKENNKAV---LWLWISHNEVNLR 485
           +I DV E N+ +   LWL +  N+VN+R
Sbjct: 59  QIIDVDEKNQLLITNLWLKLEWNDVNMR 86


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 35  RKSDQVEILTNKNFEKKLYGQNNALLVQ--FYNS 66
           + SDQ E LT K  + K+YG   + +    +YNS
Sbjct: 235 KMSDQQENLTLKEVDNKVYGMALSPVTHNLYYNS 268


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 252 TPKQPTAQNILEEIDRFLKSKNYVFPPKYANMNDISDSS 290
           TP      N  E I+RF KSK  V    Y +  +I +SS
Sbjct: 538 TPPSYNQLNYNENIERFFKSKPPV-ATMYGSDEEIINSS 575


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,479
Number of Sequences: 429
Number of extensions: 7588
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 594
length of database: 140,377
effective HSP length: 62
effective length of query: 532
effective length of database: 113,779
effective search space: 60530428
effective search space used: 60530428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)