Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000480-TA|BGIBMGA000480-PA|IPR002181|Fibrinogen,
alpha/beta/gamma chain, C-terminal globular, IPR009053|Prefoldin
         (394 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   2.2  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    24   2.2  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   6.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   8.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 85  LSAKVDFLEVESKILRNELQNTTQRVSDFDKVHASILELREDIEGLEN 132
           + +K+ F  VES + + E +    R+SD D    +I    +D +G E+
Sbjct: 8   IKSKISF-SVESLLSKKEDEEVEHRLSDRDDDDENITVDDDDTDGRES 54


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 358 NINGKYTLGLTWFDSARNEWIAV 380
           ++NG +  GL    +  N+WI+V
Sbjct: 203 DLNGAFRAGLERVQNGENQWISV 225


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 157 AQSSYLKEDQENIRQSVKAIAVSVSNAIDRAEMDRLMVKKINDSVFDLEARSKQH 211
           A  + LK+ +  +R +           +D+A  + +++  I   V +L A   QH
Sbjct: 288 AFQNLLKDTEAEVRAAAANKVKDFCQNLDKAHQESIIMNNILPCVKELVADPNQH 342


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 283 PVDTCWYAEYDHFSVSNAD 301
           PVD C +  Y    V++AD
Sbjct: 47  PVDLCTHIVYSFIGVNDAD 65


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,878
Number of Sequences: 317
Number of extensions: 3722
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 394
length of database: 114,650
effective HSP length: 58
effective length of query: 336
effective length of database: 96,264
effective search space: 32344704
effective search space used: 32344704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)