Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000479-TA|BGIBMGA000479-PA|undefined
         (130 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   4.9  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    20   6.5  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory
          receptor candidate 22 protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 21 LRQLHIIRNELKQ 33
          +RQ+H + N+LKQ
Sbjct: 29 MRQVHEVDNQLKQ 41


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
          protein 18 protein.
          Length = 124

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 60 GRLKYEGQQMRSTVAE-LRTHVSK 82
          GR   EG++++ST+ E L T  +K
Sbjct: 49 GRCTPEGKKLKSTIPEALSTDCAK 72


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,982
Number of Sequences: 317
Number of extensions: 767
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 130
length of database: 114,650
effective HSP length: 50
effective length of query: 80
effective length of database: 98,800
effective search space:  7904000
effective search space used:  7904000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)