Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000478-TA|BGIBMGA000478-PA|IPR011047|Quinonprotein
alcohol dehydrogenase-like, IPR008940|Protein prenyltransferase
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                 105   1e-22
SB_13621| Best HMM Match : DUF757 (HMM E-Value=7)                      34   0.30 
SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.90 
SB_29357| Best HMM Match : LRR_1 (HMM E-Value=0.00026)                 32   1.6  
SB_55808| Best HMM Match : Pentaxin (HMM E-Value=1.2e-08)              32   1.6  
SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)                  31   3.6  
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               29   8.4  

>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score =  105 bits (251), Expect = 1e-22
 Identities = 90/301 (29%), Positives = 147/301 (48%), Gaps = 47/301 (15%)

Query: 8   KSWSMPAPIRYVKVTS-LRFEEVLLLGLMNGEIWQVEPNSGVSMMILQTPASVRCLDVSA 66
           + W M + IRY+KV      +E LL+GL NG+I ++  N+   + +L+   SVRCLD+ A
Sbjct: 225 REWVMESVIRYIKVIGGPSGKEGLLVGLKNGQIMKIFVNNPFPVSLLKQETSVRCLDLCA 284

Query: 67  SRGCLSVVDEASTCRVYSLPSGELQYTGGRVFCLQANSMQTINVPLSHAVHQYIEHKLFN 126
            R  L+VVDE STC VY L + EL +                    S  ++QY+E K++ 
Sbjct: 285 RRTKLAVVDENSTCLVYDLNTKELLFQ-------------------SAPMYQYLEKKMYR 325

Query: 127 EAYAVACLGVTSSDWERLGVAALEEMSFEVARKA--------FQRSEN-------ITFLS 171
           +AY VACLGVT  DW  L + ALE + FE A+K         ++++ N        + L 
Sbjct: 326 DAYNVACLGVTEGDWRALALDALEGLDFETAKKGKFHDAAKLYKKTSNEEKAMEMFSDLR 385

Query: 172 LIDNLQERFDAGEKRDVIHGEILAYRGRYTD-------AARAFHSADRDDRALNLYVDLR 224
             +  +E   A + ++V   +++  + ++ +       AA  F +A  + +A+ +  +  
Sbjct: 386 QFEYAKEFLGASDPKNV--KQLIKKQAQWCETTNDPKAAADMFLTAGENMKAIEIIGENG 443

Query: 225 MFNKAQEYVGEGDGLA--ALTRRRAEWARHVNEPRAAAEMYLAAGDVKRAAQLMAETGRR 282
             +K  + VG     A      R A + + +++   AAEMY+  GD K   QL  +T   
Sbjct: 444 WIDKLLD-VGRNLNKADTECIGRCAHFFKQLDQHAYAAEMYVKMGDTKALVQLHVDTRHW 502

Query: 283 D 283
           D
Sbjct: 503 D 503



 Score =  103 bits (246), Expect = 6e-22
 Identities = 46/147 (31%), Positives = 88/147 (59%), Gaps = 2/147 (1%)

Query: 195 AYRGRYTDAARAFHSADRDDRALNLYVDLRMFNKAQEYVGEGD--GLAALTRRRAEWARH 252
           A +G++ DAA+ +     +++A+ ++ DLR F  A+E++G  D   +  L +++A+W   
Sbjct: 356 AKKGKFHDAAKLYKKTSNEEKAMEMFSDLRQFEYAKEFLGASDPKNVKQLIKKQAQWCET 415

Query: 253 VNEPRAAAEMYLAAGDVKRAAQLMAETGRRDMLIELARKLDKGSSESLRYVAEALEQAGE 312
            N+P+AAA+M+L AG+  +A +++ E G  D L+++ R L+K  +E +   A   +Q  +
Sbjct: 416 TNDPKAAADMFLTAGENMKAIEIIGENGWIDKLLDVGRNLNKADTECIGRCAHFFKQLDQ 475

Query: 313 LATSADVYQRLGDYTKVAQLAVAAGEW 339
            A +A++Y ++GD   + QL V    W
Sbjct: 476 HAYAAEMYVKMGDTKALVQLHVDTRHW 502



 Score = 87.0 bits (206), Expect = 4e-17
 Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 341  RAFSLAREQSECKRDVYLPYAHKMAQENKFIEAQKAYHMAGETATAMRVFTILVGNAVTE 400
            +AF L  +  E K +VY+PYA+ +A+ ++F EAQ+A+H AG    A+ V  +L  NAV E
Sbjct: 935  QAFELVEKHPEFKDNVYVPYANWLAENDRFDEAQEAFHKAGRRDDAVHVLEVLCRNAVIE 994

Query: 401  ERFSDAGYLHHLLASQFLDTA----SSLSGKERQKSLNQYEYNERHARIYHAYDSVHK 454
             RF DAGY +  L+ Q LD A     + +G+     L ++   +  A IY+ Y SVH+
Sbjct: 995  HRFHDAGYYYWKLSMQCLDLAKGSPETTNGEPDIGMLEKFHEYQEKAEIYYLYHSVHR 1052


>SB_13621| Best HMM Match : DUF757 (HMM E-Value=7)
          Length = 136

 Score = 34.3 bits (75), Expect = 0.30
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 141 WERLGVAALEEMSFEVARKAFQRSEN---ITFLSLIDNLQERFDAGEK 185
           WE LG AAL + + +V   A+QR++N   ++FL LI    E+    +K
Sbjct: 15  WESLGAAALRQGNHQVVEMAYQRTKNFDKLSFLYLITGNMEKLKKMQK 62


>SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 32.7 bits (71), Expect = 0.90
 Identities = 45/237 (18%), Positives = 92/237 (38%), Gaps = 31/237 (13%)

Query: 191 GEILAYRGRYTDAARAFHSADRDDRALNLYVDLRMFNKAQEYVGEGD---GLAALTRRRA 247
           GE+ +++G+Y DA   F  A              +F K  +  G+ +   G+  +   + 
Sbjct: 389 GEVHSFQGKYEDAMNNFQHAH------------SLFQKTGDDSGQANAYLGMGEVHSFQG 436

Query: 248 EWARHVNEPRAAAEMYLAAGDVKRAAQLMAETGRRDMLIELARKLDKGSSESLRYVAEAL 307
           ++   +N  + A  ++   GDV   A    E G     +  ++   + +  + ++     
Sbjct: 437 KYEDAMNNYQHAVSLFQKTGDVSDQANAYLEMGE----VHSSQGKYEDAMNNYQHALSLF 492

Query: 308 EQAGELATSADVYQRLGDYTK-VAQLAVAAGEWSRAFSLAR----EQSECKR-----DVY 357
           ++ G+ +  A  Y  +GD  K   +   A   + RA SL +    E S  K      DV+
Sbjct: 493 QKTGDESGQAHAYHGMGDVHKSEGKYEDAMNNYQRALSLFQKTGDESSRAKAYHGMGDVH 552

Query: 358 LPYAHKMAQENKFIEAQKAYHMAGETATAMRVFTILVGNAVTEERFSDA--GYLHHL 412
           L         N +  A   +   G  ++  + + ++    + + ++ DA   Y H L
Sbjct: 553 LNKGKYEDAMNNYQHALSLFQKTGNESSRAKAYHVMGDVHLNKGKYEDAMNNYQHAL 609


>SB_29357| Best HMM Match : LRR_1 (HMM E-Value=0.00026)
          Length = 521

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 510 QFKPAEGITHEEAFDLIERTPLPEVKDEQNTSDAEI----LRIDHEIDSNDPFLDKVEEL 565
           + KP   ++ +E   +I+   +PEV++E++ ++AE+       +   +   P  D+V+  
Sbjct: 8   EMKPKRTVSFDEDVKVIDSPSVPEVEEEESNANAEVESKETNAEESPEITSPVEDEVDGT 67

Query: 566 FYLEDYEIQLV--VKGHCPFCRHPAEHLKNEDDDAEDSMLND 605
               D E+++V  V          +E  K++ D+ +    ND
Sbjct: 68  EEKGDSELEVVSPVPSDSSSSSSSSEDEKDDKDEPDHDPGND 109


>SB_55808| Best HMM Match : Pentaxin (HMM E-Value=1.2e-08)
          Length = 574

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 540 TSD-AEILRIDHEIDSNDPFLDKVEELFYLEDYEIQLVVKGHCPFCRHPAEHLKNEDDDA 598
           T+D A++LR+D       P L  V ++FYL D  + +  +   PF  H    +++ +D+ 
Sbjct: 311 TADQADVLRVDLRKQGVSPNLIIVVDIFYLSD-TVAMPPRNRIPF-EHRERIIRSFEDEE 368

Query: 599 EDSML 603
           ED +L
Sbjct: 369 EDYLL 373


>SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)
          Length = 1171

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 257 RAAAEMYLAAGDVKRAAQLMAETGRRDMLIELARKLDKGSSESLRYVAEALEQAGELATS 316
           R A   YL A D K A  +   +   +    ++++   G   + + VA    ++    ++
Sbjct: 438 RQAEHHYLEAKDWKAAVNMYRTSDMWEEAYRVSKQ--SGGPNAAKQVAYLWAKSLGGDSA 495

Query: 317 ADVYQRLGDYTKVAQLAVAAGEWSRAFSLAREQSECKR-DVYLPYAHKMAQENKFIEAQK 375
             +  + G        A     +  AF LAR   + K  D++L YA  +  E K+ EA++
Sbjct: 496 VKLLTKFGLLEAAIDYAAENCAFEFAFDLARTSMKHKMPDIHLKYAMFLEDEGKYKEAEE 555

Query: 376 AYHMAGETATAMRVF 390
            +  A     A+ ++
Sbjct: 556 QFVKASRPKEAVLMY 570


>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 433 LNQYEYNERHARIYHAYDSVHKCVHEPFSLSQPETLLNAARYILALL 479
           L+ + ++ +H  ++H Y   H   H P SLS   +  N    I++++
Sbjct: 50  LHYHHHHRQHITVHHHYHHYHHHHHPPSSLSSSASSANIIIIIISII 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,954,635
Number of Sequences: 59808
Number of extensions: 803016
Number of successful extensions: 1961
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1942
Number of HSP's gapped (non-prelim): 19
length of query: 619
length of database: 16,821,457
effective HSP length: 86
effective length of query: 533
effective length of database: 11,677,969
effective search space: 6224357477
effective search space used: 6224357477
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)