Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000478-TA|BGIBMGA000478-PA|IPR011047|Quinonprotein
alcohol dehydrogenase-like, IPR008940|Protein prenyltransferase
         (619 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   7.4  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   9.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   9.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 3   GRQIPKSWSMPAPIRYVKVTSLRFEEVLLLGLMNGEI 39
           G +IP  W+ P  I + K TS    +V  +G++  E+
Sbjct: 797 GGKIPVRWTAPEAIAFRKFTSA--SDVWSMGIVCWEV 831


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 415 SQFLDTASSLSGKERQKSLNQYEY-NERHARIYHAYDS 451
           SQ   + +S +G  ++    +  Y  ERH  ++H YD+
Sbjct: 75  SQVQPSVASTTGFSKECYCCRESYLKERHITLHHCYDA 112


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 415 SQFLDTASSLSGKERQKSLNQYEY-NERHARIYHAYDS 451
           SQ   + +S +G  ++    +  Y  ERH  ++H YD+
Sbjct: 75  SQVQPSVASTTGFSKECYCCRESYLKERHITLHHCYDA 112


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 15/65 (23%), Positives = 24/65 (36%)

Query: 380 AGETATAMRVFTILVGNAVTEERFSDAGYLHHLLASQFLDTASSLSGKERQKSLNQYEYN 439
           A   ATA    T L+     +       + HHL ++   D       +++Q+   Q    
Sbjct: 119 ATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQE 178

Query: 440 ERHAR 444
           ER  R
Sbjct: 179 ERRLR 183


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,597
Number of Sequences: 429
Number of extensions: 7228
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 619
length of database: 140,377
effective HSP length: 62
effective length of query: 557
effective length of database: 113,779
effective search space: 63374903
effective search space used: 63374903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)