Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000478-TA|BGIBMGA000478-PA|IPR011047|Quinonprotein
alcohol dehydrogenase-like, IPR008940|Protein prenyltransferase
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 30 0.83
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 29 2.5
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 28 3.3
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 28 3.3
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 28 4.4
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 28 4.4
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 4.4
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 27 7.7
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 30.3 bits (65), Expect = 0.83
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 520 EEAFDLIERTPLPEVKDEQNTSDAEILRIDHEIDSNDPFLDKVEEL 565
+ A D IE TPLP V + + E+ + + D +PFL EEL
Sbjct: 370 KSAIDKIEPTPLPSVHMNSHIAKGELPKFHNSTD--NPFLTPPEEL 413
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 28.7 bits (61), Expect = 2.5
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 514 AEGITHEEAFDLIERTPLPEVKDEQNTSDAEILRIDHEIDSNDPFLDKVEELFYLEDYEI 573
+E I HE IE+ L +V+ E ++ +I R+D IDS ++ ++ E++
Sbjct: 29 SEYIAHESRE--IEKKRLQKVRKEISSVKEKIRRLDERIDS------RLTKISVKENFRK 80
Query: 574 QLVVKGHCPFCRHPAEHLKNEDDDAEDSMLNDSTASTPG 612
QL F R + L+++++D + + N+ +A+ PG
Sbjct: 81 QL-----SKF-RDTLQSLQSDENDIKRRLNNEDSANAPG 113
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 28.3 bits (60), Expect = 3.3
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 338 EWSRAFSLAREQSECKRDVYLPYAHKMAQENKFIEAQKAYHMAGETATAMRVFTILVGNA 397
E + F + ++C VY + K Q + I +AG++A +V T L+GN+
Sbjct: 1823 EPDKVFDVEENIADCIELVYPSLSSKPVQISYDIYPNVPALLAGDSAKLRQVITNLLGNS 1882
Query: 398 VTEERFSDAGYLHHLLASQFLDTASSLSGKERQKSL 433
V +F+ G H LL +D ++ +E Q L
Sbjct: 1883 V---KFTTEG--HILLRCMAID--EEINAEENQCKL 1911
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 533 EVKDEQNTSDAEILRIDHEIDSNDPFLDKVEELFYLEDYEIQLVVKGHCPF--CRHPAEH 590
E DEQ S D EIDS++ F ++ E+ F + K + + E
Sbjct: 46 EDNDEQGYSFGVNSEDDEEIDSDEAFDEEDEKRFADWSFNASKSGKSNKDHKNLNNTKEI 105
Query: 591 LKNEDDDAEDSMLND--STASTPGSPVNQKK 619
NE+DD++DS+ +D + GS +++ +
Sbjct: 106 SLNEEDDSDDSVNSDKLENEGSVGSSIDENE 136
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 591 LKNEDDDAEDSMLNDSTASTPGSPVNQ 617
+K+ED +E +N S++ P SPVN+
Sbjct: 194 VKSEDPSSESVNINSSSSLLPDSPVNE 220
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 4.4
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 406 AGYLHHLLASQFLDTASSLSGKERQKSLNQYEYNERHARIYHAYDSVHKCVHEPFSLSQP 465
+GY+ L A + ++L G ++ QYE+ ++ + Y+ + +P +
Sbjct: 81 SGYIESL-APAVQNRITALKGLQKDCDAIQYEFRQKMLDLETKYEKKY----QPIFSRRA 135
Query: 466 ETLLNAARYILALLDGEAPPGVSMLY-PLHI--FWFSRLRHQVLPLVQFKPAEGITHEEA 522
E + + + LD E + L P I FW + L H V F E IT E+
Sbjct: 136 EIIKGVSEPVDDELDHEEEIFQNNLPDPKGIPEFWLTCL-HNV-----FLVGEMITPED- 188
Query: 523 FDLIERTPLPEVKDEQNTSDAEILRIDHEIDSNDPFLDKV-EELFYLED 570
+ + R+ L +++ + D +++ E DSND F +K+ + +Y +D
Sbjct: 189 -ENVLRS-LSDIRFTNLSGDVHGYKLEFEFDSNDYFTNKILTKTYYYKD 235
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 78 STCRVYSLPS--GELQYTGGRVFCLQANSMQTINVPLSHAVH 117
S +YSLP GEL T +F + AN+M+ PLS +
Sbjct: 1533 SDANLYSLPMFFGELLITQQSIFAVTANNMKINACPLSETAN 1574
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 560 DKVEELFYLEDYEIQLVVKGHCPFCRHPAEHLKNEDD 596
+K++ L Y EDYE + V +GH F H LK+ DD
Sbjct: 36 NKLKLLSY-EDYEPE-VGEGHTKFIEHGEIELKHSDD 70
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,785
Number of Sequences: 5004
Number of extensions: 115205
Number of successful extensions: 330
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 8
length of query: 619
length of database: 2,362,478
effective HSP length: 77
effective length of query: 542
effective length of database: 1,977,170
effective search space: 1071626140
effective search space used: 1071626140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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