GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000477-TA|BGIBMGA000477-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (363 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.5  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   4.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 165  FRDKVGNEIQRILREAAVWAVAFSKMTLLVTDWN 198
            + D  GN+  R++ +    A   + +   + +WN
Sbjct: 2401 WNDSAGNKYSRLVNDPQARAAFIAHVLAFIEEWN 2434


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 227 GGWAILTAEGVPIITTSQDWVW 248
           G WA +TA+  P+  +  D  W
Sbjct: 205 GSWAGVTAQNSPLYASPLDGEW 226


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,739
Number of Sequences: 317
Number of extensions: 3243
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 363
length of database: 114,650
effective HSP length: 58
effective length of query: 305
effective length of database: 96,264
effective search space: 29360520
effective search space used: 29360520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)