GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000477-TA|BGIBMGA000477-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (363 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.2  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 233 TAEGVPIITTSQDWVWA 249
           T  G P++    DW WA
Sbjct: 95  TGNGGPLLAPYPDWTWA 111


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 299 HLTTGNKVRIKCHDRVQKIAIYKHRLAVQLPERVVV 334
           HL+TGN  R+ C  +  +   Y + + + +P  ++V
Sbjct: 201 HLSTGNYSRLACEIQFVRSMGY-YLIQIYIPSGLIV 235


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,808
Number of Sequences: 429
Number of extensions: 4214
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 363
length of database: 140,377
effective HSP length: 59
effective length of query: 304
effective length of database: 115,066
effective search space: 34980064
effective search space used: 34980064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)