Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000476-TA|BGIBMGA000476-PA|undefined
(153 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 35 0.005
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 27 1.3
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 3.8
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 25 3.8
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 5.1
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 25 6.7
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 25 6.7
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 6.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 6.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.7
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 8.8
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 35.1 bits (77), Expect = 0.005
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 51 DVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVR 110
+VKTL+ +LS +K+ K + R +++ N KVE ++PE+L A L A + + +
Sbjct: 173 NVKTLDEYLSERKSAAKPVGRTVEKL----ENATKVEKSAPEELFASLKKSASQKKSAAK 228
Query: 111 KNDP 114
++ P
Sbjct: 229 ESKP 232
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/58 (18%), Positives = 29/58 (50%)
Query: 56 ERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKND 113
++ + K++ KK++ D++Q F P N +P + +E +++ + + + D
Sbjct: 222 QKKSAAKESKPKKVLLDIEQTFTARPARGGRPNRAPRRGPSETASKTQQAPPTLSETD 279
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.1 bits (57), Expect = 1.3
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 62 KKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLK-AELSAEAVKIEKNVRKNDP 114
K+ I+KK R+ ++ EDP E+ +LK A+ +A+ E +K DP
Sbjct: 676 KEKIKKKFDRENEKLAAEDPKSVLPESELEVRLKAADELKKALDAELKSKKVDP 729
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 64 TIRKKIMRDLQQAFVEDPNEFKVENT 89
TIR MRD + ++D N+F ++NT
Sbjct: 289 TIRHMHMRDAIEKLMKDFNQFCIDNT 314
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 3.8
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 57 RHLSMKKTIRKKIMRDLQQAFVEDPNEFKV 86
+H+ + + IR K++ ++ + F D N+ K+
Sbjct: 203 KHIPLLENIRNKVLTEVPKQFSVDKNQLKM 232
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.0 bits (52), Expect = 5.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 7 IPHLRDIFGLSQQYDGNCKNFDEN 30
IPH+R+++GL + D F +N
Sbjct: 425 IPHIRELYGLPRDGDSEIDFFFQN 448
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.6 bits (51), Expect = 6.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 65 IRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRK 111
I KK+ D Q+ VE+ E E ++L+ AE VK+++ RK
Sbjct: 330 IGKKV-EDEQKTVVEEIPEMDEEERLDQELQDLSEAERVKLKRERRK 375
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 65 IRKKIMRDLQQAFVEDPN 82
IR ++D+ +AF EDPN
Sbjct: 370 IRSVFLKDITEAFREDPN 387
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 49 NGDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFK 85
N D ++E L +T+R+KI+ D Q E EF+
Sbjct: 45 NQDDSSIEAKLFAAQTLRQKIVYDFHQLPKETHIEFR 81
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 6.7
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 50 GDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEK 107
G K L++ + ++ IR+K L++ E + + EK+ A+ E K+EK
Sbjct: 75 GKEKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEK 132
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 6.7
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 5/115 (4%)
Query: 11 RDIFGLSQQYDGNCKNFDENEXXXXXXXXXXXXYRTYGNGDVKTL--ERHLSMKKTIR-K 67
+ + G +Y N + D+ + G + + ER KK +
Sbjct: 402 KSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEINSERDFQNKKIKDFE 461
Query: 68 KIMRDLQQAFVEDPNEFKVENTSPEKLKAELS--AEAVKIEKNVRKNDPTFLDML 120
KI +DL+ NE K ++ +K EL+ E +K +K V ++ + L L
Sbjct: 462 KIEQDLRACLNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSL 516
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 84 FKVENTSPEKLKAELSAEAVKIEK 107
FK+ + KLK EL+ +A+ +EK
Sbjct: 300 FKLASVFESKLKNELTEQAITLEK 323
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,260
Number of Sequences: 5004
Number of extensions: 20256
Number of successful extensions: 41
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 13
length of query: 153
length of database: 2,362,478
effective HSP length: 67
effective length of query: 86
effective length of database: 2,027,210
effective search space: 174340060
effective search space used: 174340060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)
- SilkBase 1999-2023 -