Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000476-TA|BGIBMGA000476-PA|undefined
(153 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 1.2
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 29 2.2
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 28 3.8
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 3.8
08_02_0409 + 16837792-16837896,16839256-16839328,16839376-168397... 27 8.7
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 27 8.7
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 27 8.7
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 51 DVKTLERHLSMK-KTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNV 109
D K L + MK K RKK+ D+Q V+ ++ + + EKLK LS E ++
Sbjct: 1028 DTKKLAKEWEMKVKAFRKKL-DDIQTNLVKHMDQIQKDAIDHEKLKETLSDEQFNEACDM 1086
Query: 110 RK 111
RK
Sbjct: 1087 RK 1088
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 50 GDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEK 107
G ++TLE L +KT+ ++++ ++ +E + VE ++ E L+A L +I K
Sbjct: 578 GSIETLESELQKEKTMYEELVVQMESMKIESEKKLGVE-SAKEALEARLLVVNSEIAK 634
>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 68 KIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAE--AVKIEKNVRKNDPTFL 117
+ ++DL + V P E V+N S + +A AV I + V+ DP++L
Sbjct: 1165 EFLKDLPNSLVWSPIELTVDNRSQILVLLNYAAGKIAVDINETVKNGDPSYL 1216
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 55 LERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSA--EAVKIEKNVRKN 112
LE+H+S K+ K ++++ + F+++ E E +K+K +L A + VK +N+ +N
Sbjct: 1403 LEQHISEIKSAAKDYVQEITEYFIQESCE---EAKKFQKIKMDLLAMLQRVKDVENLNRN 1459
Query: 113 D 113
+
Sbjct: 1460 E 1460
>08_02_0409 +
16837792-16837896,16839256-16839328,16839376-16839730,
16839995-16840106
Length = 214
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 78 VEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKNDPTFLDML 120
VE P + + E SP+ + EL + K+E+ + TF+D++
Sbjct: 138 VEKPTKLQ-ERRSPQHVSPELKQGSPKMERPLLPRPATFIDVM 179
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 61 MKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLK 95
MK+TI ++ + Q F +DP+ F +E + E L+
Sbjct: 144 MKRTINEEEGSPIDQLFFKDPDGFMIEICNCENLE 178
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 55 LERHLSMKKTIRKKIMRD----LQQAFVEDPNEFKVENTSPEKLKA 96
L++H S+K TI+KK++R +++ EDP+E+ ++ + E+ A
Sbjct: 486 LQQHSSLK-TIKKKLIRKALDMIRKLAEEDPDEYSNKDKTDEEKSA 530
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,592,503
Number of Sequences: 37544
Number of extensions: 107172
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 7
length of query: 153
length of database: 14,793,348
effective HSP length: 76
effective length of query: 77
effective length of database: 11,940,004
effective search space: 919380308
effective search space used: 919380308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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