GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000476-TA|BGIBMGA000476-PA|undefined
         (153 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.96 
SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)                      29   1.7  
SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)                  28   2.9  
SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)               28   3.9  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        27   5.1  
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  27   5.1  
SB_44271| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   9.0  
SB_13025| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 63  KTIRKKIMRDLQQAFVED----PNEFKVE-NTSPEKLKAELSAEAVKIEKNVRKND 113
           + + K+ M    QAF  D     N+F+   N  P KL AE+S EA +  K++ +ND
Sbjct: 162 QNVSKQHMLRFGQAFASDGVKAANDFRSRHNAPPLKLNAEMSKEAEEWAKHLSEND 217


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 9/63 (14%)

Query: 49  NGDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKN 108
           N DVKT+E    +++ IR K     ++A  ++ NE   E +S E +K E   +  K++ N
Sbjct: 718 NADVKTVEMETKIEERIRSK-----RKAIGDEVNELTQELSSAEMMKKE---QEFKLD-N 768

Query: 109 VRK 111
           VRK
Sbjct: 769 VRK 771


>SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)
          Length = 379

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 51  DVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVE---NTSPEKLKAELSAEAV 103
           +VK +E H S K   R  +++DL   +  DP   ++E   NTS  K++  L+   +
Sbjct: 131 EVKFVEEHFSGKLVARFSVLKDL-VLYNTDPRGLQIELVDNTSNSKIEKRLALSTI 185


>SB_33458| Best HMM Match : HEAT (HMM E-Value=7.9e-15)
          Length = 875

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 60  SMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKN 112
           +M +   K  M D  +A +ED NE  +EN +   +     A  V   K + +N
Sbjct: 766 AMMENANKTRMEDANEAIMEDANEAMMENANKAWMDNTNEARMVNANKAMMEN 818


>SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)
          Length = 283

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 8   PHLRDIFGLSQQYDGNCKNFDENEXXXXXXXXXXXXYRTYGNGDVKTLERHLSMKKTIRK 67
           P L    G     D +C N D                +    G+ KT    L  +K  +K
Sbjct: 11  PELLRCVGGGASSDHSCVNLDGRIDHPSWTTSEGKQSKNKDTGE-KTESIELKDRKIEKK 69

Query: 68  KIMRDLQQAFV-EDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKNDPTF 116
           K  R  +   + E+P++ K   T  E +K E        +K+  K    F
Sbjct: 70  KKKRQREDKQLGEEPSKVKKSKTEQEHVKTEKGVTPQNSQKHFEKKPKNF 119


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 62   KKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKND 113
            KK + KK+ +++QQ   ++    + E+    K KAEL     + EK +R N+
Sbjct: 1100 KKLLDKKV-QEIQQVKQKNAVSRRAESPEKTKEKAELQRLRNEYEKGIRTNE 1150


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 52  VKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVR 110
           V TLER++   +  RK+++   +Q + ++       N   E+   E++    ++E+ V+
Sbjct: 386 VHTLERNIQALEEERKELVSRFEQLYKKEDEIVSSRNVLEERYTIEINELRTRLEQEVQ 444


>SB_44271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 55 LERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPE 92
          +++    +++ +KK M+DL +A + D    K+ NTS E
Sbjct: 44 IKKRTKPQESDQKKTMQDLTRARISDQKSDKLYNTSDE 81


>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 15   GLSQQYDGNCKNFDENEXXXXXXXXXXXXYRTYGNGDVKTLERHLSMK 62
            G S+ Y     NFDE +            Y++ G  ++ T+E H ++K
Sbjct: 2446 GPSKVYQWKNSNFDEVQSLETNAVKSARVYQSNGKPNLVTVESHDALK 2493


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 50   GDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIE 106
            G+   LE  L  +K +   +  +L+       NE + +N   EKL A+L  E  + E
Sbjct: 2972 GEKVDLEIALEREKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCE 3028


>SB_13025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 68  KIMRDLQQAFVEDPNEF--KVENTSPEKLKAELSAEAVKIEKNV 109
           K +R+L QAF E  NEF  ++ + +  K +  ++ E  K+  +V
Sbjct: 2   KYLRNLMQAFNESSNEFLKRIGSLADGKTEVRMADEFAKVTLDV 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.130    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,282,906
Number of Sequences: 59808
Number of extensions: 133441
Number of successful extensions: 294
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 11
length of query: 153
length of database: 16,821,457
effective HSP length: 76
effective length of query: 77
effective length of database: 12,276,049
effective search space: 945255773
effective search space used: 945255773
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)