GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000476-TA|BGIBMGA000476-PA|undefined
         (153 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT006790-1|AAP35436.1|  328|Homo sapiens ubiquitin carboxyl-term...    30   3.8  
BC025369-1|AAH25369.1|  326|Homo sapiens UCHL5 protein protein.        30   3.8  
BC015521-1|AAH15521.1|  328|Homo sapiens ubiquitin carboxyl-term...    30   3.8  
AL136370-15|CAI10832.1|  355|Homo sapiens ubiquitin carboxyl-ter...    30   3.8  
AL136370-13|CAI10833.1|  328|Homo sapiens ubiquitin carboxyl-ter...    30   3.8  
AL136370-12|CAI10830.1|  316|Homo sapiens ubiquitin carboxyl-ter...    30   3.8  
AL136370-11|CAI10829.1|  326|Homo sapiens ubiquitin carboxyl-ter...    30   3.8  
AF157320-1|AAF67486.1|  316|Homo sapiens AD-019 protein protein.       30   3.8  
AF151828-1|AAD34065.1|  316|Homo sapiens CGI-70 protein protein.       30   3.8  
AK222984-1|BAD96704.1|  292|Homo sapiens tetratricopeptide repea...    29   6.7  
U46570-1|AAB36871.1|  292|Homo sapiens tetratricopeptide repeat ...    29   8.8  
AK222641-1|BAD96361.1|  292|Homo sapiens tetratricopeptide repea...    29   8.8  

>BT006790-1|AAP35436.1|  328|Homo sapiens ubiquitin
           carboxyl-terminal hydrolase L5 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 47  YGNGDVK-TLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI 105
           Y  G+++  L   +S +K I ++ + +LQ+   E+P +    N+    +++E++   + I
Sbjct: 211 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI 270

Query: 106 EKNVRK 111
           E+ V+K
Sbjct: 271 EEEVQK 276


>BC025369-1|AAH25369.1|  326|Homo sapiens UCHL5 protein protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 47  YGNGDVK-TLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI 105
           Y  G+++  L   +S +K I ++ + +LQ+   E+P +    N+    +++E++   + I
Sbjct: 211 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI 270

Query: 106 EKNVRK 111
           E+ V+K
Sbjct: 271 EEEVQK 276


>BC015521-1|AAH15521.1|  328|Homo sapiens ubiquitin
           carboxyl-terminal hydrolase L5 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 47  YGNGDVK-TLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI 105
           Y  G+++  L   +S +K I ++ + +LQ+   E+P +    N+    +++E++   + I
Sbjct: 211 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI 270

Query: 106 EKNVRK 111
           E+ V+K
Sbjct: 271 EEEVQK 276


>AL136370-15|CAI10832.1|  355|Homo sapiens ubiquitin
           carboxyl-terminal hydrolase L5 protein.
          Length = 355

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 47  YGNGDVK-TLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI 105
           Y  G+++  L   +S +K I ++ + +LQ+   E+P +    N+    +++E++   + I
Sbjct: 238 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI 297

Query: 106 EKNVRK 111
           E+ V+K
Sbjct: 298 EEEVQK 303


>AL136370-13|CAI10833.1|  328|Homo sapiens ubiquitin
           carboxyl-terminal hydrolase L5 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 47  YGNGDVK-TLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI 105
           Y  G+++  L   +S +K I ++ + +LQ+   E+P +    N+    +++E++   + I
Sbjct: 211 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI 270

Query: 106 EKNVRK 111
           E+ V+K
Sbjct: 271 EEEVQK 276


>AL136370-12|CAI10830.1|  316|Homo sapiens ubiquitin
           carboxyl-terminal hydrolase L5 protein.
          Length = 316

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 47  YGNGDVK-TLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI 105
           Y  G+++  L   +S +K I ++ + +LQ+   E+P +    N+    +++E++   + I
Sbjct: 211 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI 270

Query: 106 EKNVRK 111
           E+ V+K
Sbjct: 271 EEEVQK 276


>AL136370-11|CAI10829.1|  326|Homo sapiens ubiquitin
           carboxyl-terminal hydrolase L5 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 47  YGNGDVK-TLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI 105
           Y  G+++  L   +S +K I ++ + +LQ+   E+P +    N+    +++E++   + I
Sbjct: 211 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI 270

Query: 106 EKNVRK 111
           E+ V+K
Sbjct: 271 EEEVQK 276


>AF157320-1|AAF67486.1|  316|Homo sapiens AD-019 protein protein.
          Length = 316

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 47  YGNGDVK-TLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI 105
           Y  G+++  L   +S +K I ++ + +LQ+   E+P +    N+    +++E++   + I
Sbjct: 211 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI 270

Query: 106 EKNVRK 111
           E+ V+K
Sbjct: 271 EEEVQK 276


>AF151828-1|AAD34065.1|  316|Homo sapiens CGI-70 protein protein.
          Length = 316

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 47  YGNGDVK-TLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKI 105
           Y  G+++  L   +S +K I ++ + +LQ+   E+P +    N+    +++E++   + I
Sbjct: 211 YSEGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLI 270

Query: 106 EKNVRK 111
           E+ V+K
Sbjct: 271 EEEVQK 276


>AK222984-1|BAD96704.1|  292|Homo sapiens tetratricopeptide repeat
           domain 1 variant protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 56  ERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKL-KAELSAE-AVKIEKNV 109
           E HL   +   ++   D + +F E+P   KVEN S E +  +EL  E  +++EKN+
Sbjct: 50  EAHLQEDQG-EEECFHDCRASFEEEPGADKVENKSNEDVNSSELDEEYLIELEKNM 104


>U46570-1|AAB36871.1|  292|Homo sapiens tetratricopeptide repeat
           protein protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 56  ERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKL-KAELSAE-AVKIEKNV 109
           E HL   +   ++   D   +F E+P   KVEN S E +  +EL  E  +++EKN+
Sbjct: 50  EAHLQEDQG-EEECFHDCSASFEEEPGADKVENKSNEDVNSSELDEEYLIELEKNM 104


>AK222641-1|BAD96361.1|  292|Homo sapiens tetratricopeptide repeat
           domain 1 variant protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 56  ERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKL-KAELSAE-AVKIEKNV 109
           E HL   +   ++   D   +F E+P   KVEN S E +  +EL  E  +++EKN+
Sbjct: 50  EAHLQEDQG-EEECFHDCSASFEEEPGADKVENKSNEDVNSSELDEEYLIELEKNM 104


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.314    0.130    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,508,270
Number of Sequences: 224733
Number of extensions: 508242
Number of successful extensions: 1242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 12
length of query: 153
length of database: 73,234,838
effective HSP length: 84
effective length of query: 69
effective length of database: 54,357,266
effective search space: 3750651354
effective search space used: 3750651354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)