Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000476-TA|BGIBMGA000476-PA|undefined
(153 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.15
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 31 0.34
At4g10920.1 68417.m01775 transcriptional coactivator p15 (PC4) f... 29 1.0
At4g27595.1 68417.m03964 protein transport protein-related low s... 29 1.8
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 28 2.4
At5g45470.1 68418.m05586 expressed protein contains Pfam domain,... 28 3.2
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 28 3.2
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 27 4.2
At3g53350.3 68416.m05888 myosin heavy chain-related low similari... 27 5.6
At3g53350.2 68416.m05887 myosin heavy chain-related low similari... 27 5.6
At3g53350.1 68416.m05886 myosin heavy chain-related low similari... 27 5.6
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica... 27 7.3
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 27 7.3
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 26 9.7
At2g07260.1 68415.m00833 hypothetical protein 26 9.7
At1g69200.1 68414.m07921 pfkB-type carbohydrate kinase family pr... 26 9.7
At1g31870.1 68414.m03917 expressed protein 26 9.7
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.15
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 53 KTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKN 112
K +ER K RKK + ++ VE P E K E+ + E E ++EK + +
Sbjct: 154 KPIERKQVEKPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPVERKQVEKPIERK 213
Query: 113 DPTFL 117
PT L
Sbjct: 214 RPTKL 218
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 53 KTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRK 111
K +ER K RK++ + +++ E P E K E+ + E E ++EK V +
Sbjct: 145 KPVERKKVEKPIERKQVEKPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPVER 203
>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
family protein similar to SP|P50532 Chromosome assembly
protein XCAP-C {Xenopus laevis}; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 31.1 bits (67), Expect = 0.34
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 51 DVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAEL 98
D+K L M++ KK + DLQ AF + + + + P+KL+A L
Sbjct: 962 DMKKKYNELEMREKGYKKKLNDLQIAFTKHMEQIQKDLVDPDKLQATL 1009
>At4g10920.1 68417.m01775 transcriptional coactivator p15 (PC4)
family protein (KELP) similar to SP|P53999 Activated RNA
polymerase II transcriptional coactivator p15 (PC4)
(p14) {Homo sapiens}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4); supporting cDNA
gi|2997685|gb|AF053303.1|AF053303
Length = 165
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 62 KKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVK 104
K+ I K ++ L ++ +++ EFKV + EKL +LS ++ K
Sbjct: 6 KEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHK 48
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 47 YGNGDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIE 106
+ N +K+ E LS+K T + + D++Q + E K EKLKA+ ++ KIE
Sbjct: 896 FENEKLKSKEA-LSLKTT---EELSDVKQTLADKEKELKTAVVENEKLKAQAASSFQKIE 951
Query: 107 --KNVRKN 112
KN++++
Sbjct: 952 ELKNLKQS 959
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 52 VKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRK 111
+K LE+ ++ +RKK R+L+++ +++ + K+E+ K K E +K K+V
Sbjct: 82 MKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLKLEDLVAFKAKLEAYQAGLK-RKHVEM 140
Query: 112 ND 113
D
Sbjct: 141 ED 142
>At5g45470.1 68418.m05586 expressed protein contains Pfam domain,
PF04578: Protein of unknown function, DUF594
Length = 866
Score = 27.9 bits (59), Expect = 3.2
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 49 NGDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKN 108
+G +K LER ++ K + QA PN K+ K +A L + V I++
Sbjct: 153 SGTIKYLERTTALYSASLDKFRDSMIQAPDPGPNYAKLMEEYKAKKEARLPTKIVLIDEP 212
Query: 109 VRKNDPTFLD 118
++N P L+
Sbjct: 213 DKENRPKKLE 222
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 57 RHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEK 107
+ +S KTI + + DL+Q+ + E + EKLKAE + +IE+
Sbjct: 991 KQVSTLKTIDE--LSDLKQSLIHKEKELQAAIVENEKLKAEAALSLQRIEE 1039
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 27.5 bits (58), Expect = 4.2
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 49 NGDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENT---SPEKLKAELSAEAVKI 105
N +VK +E+ + M++ RK + DL++A V+ +E +NT S E K A ++
Sbjct: 570 NKEVKGMEKQILMEREARKSLETDLEEA-VKSLDEMN-KNTSILSRELEKVNTHASNLED 627
Query: 106 EKNV 109
EK V
Sbjct: 628 EKEV 631
Score = 27.1 bits (57), Expect = 5.6
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 52 VKTLERHLSMKKTIRKKIMRDLQQAFVE--DPNEFKVENTSPEKLKAELSAEAVKIEKNV 109
V LE L + + K+ +L E + E N EK K E+SA + +EK++
Sbjct: 457 VSDLETMLDESRALCSKLESELAIVHEEWKEAKERYERNLDAEKQKNEISASELALEKDL 516
Query: 110 RKNDPTFLDMLXXXXXXXXXXXXQPPAEKTSFWRRLTMKNK 150
R+ L+ + E ++++ NK
Sbjct: 517 RRRVKDELEGVTHELKESSVKNQSLQKELVEIYKKVETSNK 557
>At3g53350.3 68416.m05888 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 50 GDVKTLERHLSMKKTIRKKIM-RDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEK 107
GD+K LE L +R +M ++++ + E KVE + E ++AEL ++ E+
Sbjct: 299 GDLKKLESDLM---EVRGSLMDKEMELQILRSAMEKKVETANTEAMEAELKRVKIQCEQ 354
>At3g53350.2 68416.m05887 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 50 GDVKTLERHLSMKKTIRKKIM-RDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEK 107
GD+K LE L +R +M ++++ + E KVE + E ++AEL ++ E+
Sbjct: 299 GDLKKLESDLM---EVRGSLMDKEMELQILRSAMEKKVETANTEAMEAELKRVKIQCEQ 354
>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 396
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 50 GDVKTLERHLSMKKTIRKKIM-RDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEK 107
GD+K LE L +R +M ++++ + E KVE + E ++AEL ++ E+
Sbjct: 301 GDLKKLESDLM---EVRGSLMDKEMELQILRSAMEKKVETANTEAMEAELKRVKIQCEQ 356
>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|P41410 DNA
repair protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1256
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 75 QAFVEDPNEFKVENTSPEKLKAELSAEAVKIEKNVRKND 113
+ FVEDP++++ E + L+ + + VK + KN+
Sbjct: 1212 EEFVEDPSQWQAEKIEDDVLREIVEEDKVKSFHMIMKNE 1250
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 59 LSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIE 106
L ++ RK+ R+ + +E+ +VE +K++ L +E +K+E
Sbjct: 63 LKREEEERKRRQREAELKLIEEETVKRVEEAIRKKVEESLQSEKIKME 110
>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 894
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 84 FKVENTSPEKLKAELSAEAVKIEKNVRKNDPTFLDMLXXXXXXXXXXXXQPP 135
+++ +T PE K + AE I + + DP+ LD L +PP
Sbjct: 528 WRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLTNISTLSSVYHKPP 579
>At2g07260.1 68415.m00833 hypothetical protein
Length = 300
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 56 ERHLSMKKTIRKKIMRDLQQAFVEDPNEFKV 86
E L +KK + K++RDL + ED ++K+
Sbjct: 224 EIDLKVKKWAKNKLIRDLLSSLEEDEKKYKL 254
>At1g69200.1 68414.m07921 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 614
Score = 26.2 bits (55), Expect = 9.7
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 48 GNGDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVENTSPEKLKAELSAEAVKIEK 107
GNG V + S+K+T +KK++ ++ +E+ +EF V+N + L E A+K +K
Sbjct: 64 GNGAVVGKKPSKSVKRTTKKKVV--VKDEPLEEISEFLVDN--DDVLDKESIVSALKPKK 119
>At1g31870.1 68414.m03917 expressed protein
Length = 561
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 62 KKTIRKKIMRDLQQAFVEDPNEFKVE--NTSPEKLKAELSAEAVKIEKN---VRKNDPTF 116
K+ +++ ++ Q+ +E P E K+E +K +AE + +++EK+ R D
Sbjct: 394 KRISKEEYLKSKQKKVIEKPKEIKLEWGKGLAQKREAEARLQELELEKDKPFARTRDDPE 453
Query: 117 LDML 120
LD +
Sbjct: 454 LDQM 457
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.130 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,523
Number of Sequences: 28952
Number of extensions: 99924
Number of successful extensions: 227
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 24
length of query: 153
length of database: 12,070,560
effective HSP length: 75
effective length of query: 78
effective length of database: 9,899,160
effective search space: 772134480
effective search space used: 772134480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)
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