Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000475-TA|BGIBMGA000475-
PA|IPR001580|Calreticulin/calnexin, IPR008985|Concanavalin A-like
lectin/glucanase, IPR000886|Endoplasmic reticulum targeting sequence,
IPR009169|Calreticulin
         (398 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.7  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   2.9  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   2.9  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 20  RPVANESEPLEVKFGLTLQQIID 42


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 46  FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 79
           FGK   T   FFSD + D  +    D   Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 46  FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 79
           FGK   T   FFSD + D  +    D   Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.139    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,760
Number of Sequences: 317
Number of extensions: 4269
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 398
length of database: 114,650
effective HSP length: 58
effective length of query: 340
effective length of database: 96,264
effective search space: 32729760
effective search space used: 32729760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)