GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000475-TA|BGIBMGA000475-
PA|IPR001580|Calreticulin/calnexin, IPR008985|Concanavalin A-like
lectin/glucanase, IPR000886|Endoplasmic reticulum targeting sequence,
IPR009169|Calreticulin
         (398 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.6  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 3   RPVANESEPLEVKFGITLQQIID 25


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 71  RPVANESEPLEVKFGITLQQIID 93


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P +NE +PL V+F +  +Q ID
Sbjct: 71  RPVANESEPLEVKFGITLQQIID 93


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 82  KPFSNEGKPLVVQFTVKHEQDID 104
           +P  NE +PLV+ F +   Q ID
Sbjct: 40  RPVGNESEPLVLSFGLTLMQIID 62


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.139    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,078
Number of Sequences: 429
Number of extensions: 4805
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 398
length of database: 140,377
effective HSP length: 59
effective length of query: 339
effective length of database: 115,066
effective search space: 39007374
effective search space used: 39007374
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)