Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000474-TA|BGIBMGA000474-PA|IPR002917|GTP-binding
protein, HSR1-related, IPR005289|GTP-binding, IPR006073|GTP1/OBG
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 235 9e-63
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 188 2e-48
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 138 2e-33
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 80 1e-15
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 38 0.004
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 38 0.005
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 36 0.016
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 33 0.11
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 33 0.11
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 33 0.15
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 32 0.19
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 28 3.1
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar... 28 3.1
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 28 3.1
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 28 4.1
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 27 5.5
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 27 5.5
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 7.2
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 27 7.2
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 27 9.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 9.6
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 235 bits (576), Expect = 9e-63
Identities = 159/479 (33%), Positives = 234/479 (48%), Gaps = 47/479 (9%)
Query: 6 LKKPSKRQPARLRYKIEKKVKEHNRKQRXXXXXXXXXXXXXPIQ--IPNICPFKEDILXX 63
LKK SKR+ RLR +IEKK E RKQ+ P IPN P+K+ IL
Sbjct: 4 LKKKSKRRTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKILAE 63
Query: 64 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTNLNTLVTNAQARGK-------VH 116
++ + AQA +
Sbjct: 64 IEEQKRIREEEKLARRASGQVDAAMEEEDAVDENGSLMISKIAEAAQASNPDDEEEFVME 123
Query: 117 EAFKGDSEPSQDVE-FGKDRKQENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQV 175
E G++ D E + K + S K Y +EFKKV+ ++VIL ++DARDP GTR V
Sbjct: 124 EDNLGEAPLLVDSESYEASVKADTSRKAYDKEFKKVVEASDVILYVLDARDPEGTRSKDV 183
Query: 176 EEAVRESG---KRLVLVLNKADLVPRDNLTAWLKYLRQSAPAVPFKASTQDQQHNLGRRK 232
E V S KRL+ V+NK DLVP + L W+ YLR P +P ++++ NL
Sbjct: 184 ERQVLASSAEEKRLIFVINKIDLVPSEVLNKWVTYLRNFFPTIPMRSASGSGNSNL---- 239
Query: 233 MKHIVKEKEMKGSACVGAELLMSLLGNYCRNKGIKTSITVGVVGLPNVGKSSIINSL--- 289
K SA L+ L +Y K +K+S+TVGV+G PNVGKSS+IN+L
Sbjct: 240 -------KHQSASASSTISNLLKSLKSYSAKKKLKSSLTVGVIGYPNVGKSSVINALVNR 292
Query: 290 ---NRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDST--VALKNAIRV 344
RS C G+ G+T ++ V+LD+K++++DSPGIVF S D + + NA+
Sbjct: 293 SANGRSAPCPAGNVAGMTTSLREVKLDNKLRLVDSPGIVFPSSDSKDDLYRLVMLNAVSS 352
Query: 345 GSLKDPVTPATAILQRANK-----QTLQDLYRIP------DFSTPQEFFAQLAQRMGRFK 393
+ DPV A+ ILQ ++ + + Y +P D T +F +A++ GR
Sbjct: 353 TKVDDPVAVASYILQFLSRVPGQLERMFQRYELPPLLNTSDIDTATDFLVNIARKRGRLG 412
Query: 394 KGGVPDQEAASRILLNDWNIGKVRYFTEPP---ETADADIHVDAQIVASIAKEFDINSF 449
+GG+P+ AA+ I++NDW+ G++ ++ EP E +++ D QIV AKEFD+N F
Sbjct: 413 RGGIPNLNAAANIVINDWHAGRIEWWAEPEVINEKNSSEVQ-DTQIVTEWAKEFDLNDF 470
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 188 bits (458), Expect = 2e-48
Identities = 118/346 (34%), Positives = 184/346 (53%), Gaps = 29/346 (8%)
Query: 114 KVHEAFKGDSEPSQDVEFG-KDRK-QENSLKTYYREFKKVISEAEVILEIVDARDPLGTR 171
K+ E + + S DV +D + K + E KVI ++V+++++DARDP+GTR
Sbjct: 174 KIEERILANPDESDDVMLAARDAIFSKGQSKRIWNELYKVIDSSDVLIQVLDARDPVGTR 233
Query: 172 CIQVEEAVRE--SGKRLVLVLNKADLVPRDNLTAWLKYLRQSAPAVPFKASTQDQQHNLG 229
C VE +R S K ++LVLNK DLVP AW+K L + P + F AS + + G
Sbjct: 234 CGTVERYLRNEASHKHMILVLNKVDLVPTSVAAAWVKILAKEYPTIAFHASINN---SFG 290
Query: 230 RRKMKHIVKEKEMKGSACVGAELLMSLLGNYCRNKGIKTSITVGVVGLPNVGKSSIINSL 289
KGS L+ +L + K I+VG++G PN GKSSIIN+L
Sbjct: 291 -------------KGS-------LIQILRQFASLHSDKKQISVGLIGFPNAGKSSIINTL 330
Query: 290 NRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVALKNAIRVGSLKD 349
+ K CNV PG TK Q V L +I ++D PGIV S +SD+ + LK +RV ++ +
Sbjct: 331 RKKKVCNVAPIPGETKVWQYVALMKRIFLIDCPGIVPPSSNDSDAELLLKGVVRVENVSN 390
Query: 350 PVTPATAILQRANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLN 409
P +L R + L+ Y I ++ EF A+LA++ GR KGG PD+ + ++++LN
Sbjct: 391 PEAYIPTVLSRCKVKHLERTYEISGWNDSTEFLAKLAKKGGRLLKGGEPDEASVAKMVLN 450
Query: 410 DWNIGKVRYFTEPP--ETADADIHVDAQIVASIAKEFDINSFEAME 453
D+ GK+ +F P +++ +I+ ++ + D + EA E
Sbjct: 451 DFMRGKIPWFIGPKGLSSSNDEINSSQKVATQQTEGSDQDGEEAEE 496
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 138 bits (334), Expect = 2e-33
Identities = 100/325 (30%), Positives = 161/325 (49%), Gaps = 29/325 (8%)
Query: 127 QDVEFGKDRKQENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESG--K 184
QDVE E +L+ + R+ +VI ++V+++IVDAR+PL R +E+ V+E G K
Sbjct: 144 QDVEGFIVTPFERNLEIW-RQLWRVIERSDVVVQIVDARNPLFFRSAHLEQYVKEVGPSK 202
Query: 185 RLVLVLNKADLVPRDNLTAWLKYLRQS-APAVPFKASTQDQQHNLGR----------RKM 233
+ L++NKAD++ + W Y ++ P + F A + + G ++
Sbjct: 203 KNFLLVNKADMLTEEQRNYWSSYFNENNIPFLFFSARMAAEANERGEDLETYESTSSNEI 262
Query: 234 KHIVK--EKEMKGSACVGAELLMSLLGNYCRN-KGIKTSITVGVVGLPNVGKSSIINSLN 290
++ E ++ S ++L + + KT +T G+VG PNVGKSS IN+L
Sbjct: 263 PESLQADENDVHSSRIATLKVLEGIFEKFASTLPDGKTKMTFGLVGYPNVGKSSTINALV 322
Query: 291 RSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVALKNAIRVGSLKDP 350
SK +V STPG TK QT+ L K+ +LD PG+VF S + + + L + + L++
Sbjct: 323 GSKKVSVSSTPGKTKHFQTINLSEKVSLLDCPGLVFPSFATTQADLVLDGVLPIDQLREY 382
Query: 351 VTPATAILQRANKQTLQDLYRI-----------PDFSTPQEFFAQLAQRMGRFK-KGGVP 398
P+ + +R K+ L+ LY I + QE A+ G + G P
Sbjct: 383 TGPSALMAERIPKEVLETLYTIRIRIKPIEEGGTGVPSAQEVLFPFARSRGFMRAHHGTP 442
Query: 399 DQEAASRILLNDWNIGKVRYFTEPP 423
D A+RILL D+ GK+ Y PP
Sbjct: 443 DDSRAARILLKDYVNGKLLYVHPPP 467
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 79.8 bits (188), Expect = 1e-15
Identities = 79/286 (27%), Positives = 132/286 (46%), Gaps = 20/286 (6%)
Query: 146 REFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESGKRLVLVLNKADLVPRDNLTAWL 205
+ K + S ++ +E+ DAR PL +R +E+ + + K ++V NK DL + A +
Sbjct: 27 KRLKNLTSSNDIFVEVRDARIPLTSRNYVMEDFLNK--KNRIIVYNKCDLADTFHTKAKV 84
Query: 206 KYLRQSAPAVPFKASTQDQQHNLGRRKMKHIVKEKEMKGSACVGAELLMSLLGNYCRNKG 265
R A F+ + K I A A+ L+ L+
Sbjct: 85 SKHRIQNLAQQFQNVECWFKETSTPEKSAFITP---YVSKAPYFAKELLRLIRTLVDQAS 141
Query: 266 IKTSITVGVVGLPNVGKSSIINS-----LNRSKACNVGSTPGVTKQM-QTVQL--DSKIK 317
+ V VG+PN GKSSI+NS L +SK+ VG+ PGVTK++ + V+L D +
Sbjct: 142 ANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVY 201
Query: 318 ILDSPGIVFQS--GPESDSTVALKNAIRVGSLKDPVTPATAILQRANK--QTLQDLYRIP 373
+LD+PGI+ S PE ++L ++ G + PVT +L N+ +L + +P
Sbjct: 202 MLDTPGIMTPSITKPEDMLKLSLVGCVKEG-IVHPVTVVDYLLFHLNRIDPSLYSKWSLP 260
Query: 374 DFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWNIGKVRYF 419
+ EF A + + KGG D+ S ++ + IG++ F
Sbjct: 261 T-NDVDEFLQNTAYKARKLTKGGF-DENFVSNYVIQQYRIGRLGRF 304
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 37.9 bits (84), Expect = 0.004
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 271 TVGVVGLPNVGKSSIINSL--NRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIV 325
TVG +G P+VGKS+++ L RS+A T T +KI+ILD PGI+
Sbjct: 65 TVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGII 121
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 37.5 bits (83), Expect = 0.005
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 266 IKTSITVGVVGLPNVGKSSIINSLNRSKA 294
+KT +G+VGLPN GKS+++N L SK+
Sbjct: 233 LKTICEIGLVGLPNAGKSTLLNCLTASKS 261
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 35.9 bits (79), Expect = 0.016
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 271 TVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKI---KILDSPGIVFQ 327
T+ V G PNVGKSS +N + R++ +V TK + D K +++D+PGI+
Sbjct: 170 TLLVCGYPNVGKSSFMNKVTRAQV-DVQPYAFTTKSLFVGHFDYKYLRWQVIDTPGIL-D 227
Query: 328 SGPESDSTVALKNAIRVGSLKDPV 351
E +T+ +++ + L+ V
Sbjct: 228 HPLEQMNTIEMQSITAMAHLRSAV 251
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/56 (28%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 272 VGVVGLPNVGKSSIINSLNRSKACNVG-STPGVTKQMQTVQLD-SKIKILDSPGIV 325
V +G P+VGKS++++++ ++K+ +T ++ D ++I++LD PGI+
Sbjct: 65 VAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGII 120
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 33.1 bits (72), Expect = 0.11
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 270 ITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVT 304
+ +G+VG+PN+GKS++ L ++ N + P T
Sbjct: 46 LKIGIVGMPNIGKSTLFQILTKTNLGNPANYPFAT 80
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 32.7 bits (71), Expect = 0.15
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 269 SITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVT 304
++ G+VG+PNVGKS+ ++ +S N + P T
Sbjct: 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYAT 55
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 32.3 bits (70), Expect = 0.19
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 258 GNYCRNKGIKTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLD 313
G C+ ++ I V ++G N GKSS+IN L + V G T+ V +D
Sbjct: 229 GGKCKEV-LRKGINVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVD 283
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 197 PRDNLTAWLKYLRQSAPAVPFKASTQDQQHNLG 229
PR NL A LKYLR++ P +PF +T Q+ ++G
Sbjct: 41 PR-NLRA-LKYLRENYPQLPFVLATGRQRTSVG 71
>SPBC215.14c |vps20||vacuolar sorting protein
Vps20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 311 QLDSKIKILDSPGIVFQSGPESDSTVALKNAI 342
Q D K+K L+ PG +G + +V LKNAI
Sbjct: 162 QEDEKVKDLEKPGFTPSTGVDVLPSVPLKNAI 193
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 270 ITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVT 304
I +G VG P+ GKS+++N+L + A G+ P T
Sbjct: 5 ILIGFVGKPSSGKSTMLNALTDATA-KTGNFPFTT 38
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 409 NDWNIGKVRYFTEPPETADADIHVDAQIVASIAKEFDINSFE---AMETDIVNSLNTDST 465
+ + + + RYF P ++ ++ V ++ ++ KE ++ ++E D +NS N
Sbjct: 161 SSFRVSRSRYFPRPHRSSK-NLSVSNRLQLAVFKETTSSTLSHGNSVEADEINSFNPTPF 219
Query: 466 KIEPIKITSTGP 477
P+ T++ P
Sbjct: 220 SSSPLHFTNSSP 231
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 467 IEPIKITSTGPVAAV----LPDHMQVDEEDSSMLPKALNIRNRLDKTGKSQEKTK 517
IE +K+ + A+ +P + +EE S L K I L+K K EKTK
Sbjct: 248 IEKLKMYDFSAIRAIFIGSVPGKFEGEEESSWGLGKLKKILKMLEKDSKKDEKTK 302
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 114 KVHEAFKG-DSEPSQDVEFGKDRKQENSLKTYYREFKKVISEAEVILEI 161
K+ E + D QD +F K + ++ L++Y + ISE V++++
Sbjct: 517 KIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVMMKL 565
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 361 ANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGVP 398
A + TL+D DFS PQ+F A LAQ G G VP
Sbjct: 156 AKQTTLRD-----DFS-PQKFMASLAQIPGPLPSGNVP 187
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 306 QMQTVQLDSKIKILDSPGIVFQSGPESDSTV 336
Q + DS IK+ ++P ++ S PES S V
Sbjct: 505 QEDLISKDSVIKLKENPSVIPHSEPESSSKV 535
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 26.6 bits (56), Expect = 9.6
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 364 QTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWNIGKVRYFTEPP 423
QT DLY I D+ + E F L Q GRF + A + L + + Y P
Sbjct: 373 QTASDLYLITDYMSGGELFWHL-QHEGRFPEQRAKFYIAELVLALEHLHKHDIIYRDLKP 431
Query: 424 ET--ADADIHV 432
E DAD H+
Sbjct: 432 ENILLDADGHI 442
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 462 TDSTKIEPIKITSTGPVAAVLPDHMQ-VDEEDSSMLPKALNIRNRLDKTGKSQEKTKADP 520
T KIE K + G + + + EE+ S +++++LD+T K +AD
Sbjct: 933 TGKLKIEESKSSDLGKKLTARQEEISNLKEENMSQSQAITSVKSKLDETLSKSSKLEADI 992
Query: 521 EML 523
E L
Sbjct: 993 EHL 995
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,670
Number of Sequences: 5004
Number of extensions: 87155
Number of successful extensions: 264
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 26
length of query: 586
length of database: 2,362,478
effective HSP length: 77
effective length of query: 509
effective length of database: 1,977,170
effective search space: 1006379530
effective search space used: 1006379530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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