Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000474-TA|BGIBMGA000474-PA|IPR002917|GTP-binding
protein, HSR1-related, IPR005289|GTP-binding, IPR006073|GTP1/OBG
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 341 7e-94
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 188 1e-47
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 112 6e-25
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 92 1e-18
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 83 8e-16
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 69 1e-11
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 60 5e-09
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 41 0.002
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 41 0.002
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 40 0.006
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 40 0.007
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 39 0.010
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 39 0.013
10_08_0842 - 20954712-20957738 37 0.039
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 36 0.068
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 36 0.090
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 36 0.090
03_02_0267 + 6990674-6990890,6991692-6991761,6991824-6991913,699... 36 0.12
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 35 0.21
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 33 0.48
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 33 0.48
07_01_0075 - 558829-560859 33 0.48
06_01_0668 - 4882174-4884204 33 0.48
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 33 0.63
03_02_0315 - 7401708-7401860,7401962-7402123,7402211-7402279,740... 33 0.63
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 32 1.1
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027... 32 1.5
03_05_0201 + 21924279-21925205,21925700-21926320 31 1.9
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 31 2.6
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 31 2.6
03_06_0579 + 34870958-34874578 31 2.6
08_02_1214 + 25333861-25334083,25334916-25335159,25335258-253353... 31 3.4
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 30 4.5
02_05_0639 - 30552148-30552265,30552362-30552523,30553177-305532... 30 4.5
01_06_0966 - 33453963-33456692 30 4.5
01_06_0603 + 30530486-30530984,30531174-30531202,30531484-305316... 30 4.5
06_03_0014 - 15403508-15403648,15404091-15404204,15404253-154043... 30 5.9
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 29 7.8
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 29 7.8
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 341 bits (839), Expect = 7e-94
Identities = 201/536 (37%), Positives = 289/536 (53%), Gaps = 16/536 (2%)
Query: 1 MAKFKLKKPSKRQPARLRYKIEKKVKEHNRKQRXXXXXXXXXXXXXPIQ---IPNICPFK 57
M K K SKR R ++K+ +KVKEH+RK+R + IPN PFK
Sbjct: 1 MVKKSKKSKSKRVTLRQKHKVLRKVKEHHRKKRKEAKKEGKSHRKKVEKDPGIPNEWPFK 60
Query: 58 EDILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTNLNTLVTNAQARGKVHE 117
E L NL + A A+G
Sbjct: 61 EQELKALEARRAQALQELELKKEARKERARKRKLGLLEDEDIANL---ASAASAQGS--- 114
Query: 118 AFKGDSEPSQDVEFGKDRKQENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQVEE 177
F ++ + Q++S + +Y+E KVI ++VILE++DARDPLGTRCI +E+
Sbjct: 115 EFAEKDAAKENASLDVVKSQDHSERAFYKELVKVIEASDVILEVLDARDPLGTRCIDMEK 174
Query: 178 AVRES--GKRLVLVLNKADLVPRDNLTAWLKYLRQSAPAVPFKASTQDQQHNLGRRKMKH 235
VR++ KR+VL+LNK DLVP++++ WL YLR+ P V FK +TQ+Q+ LG + K
Sbjct: 175 MVRKADPSKRIVLLLNKIDLVPKESVEKWLTYLREEMPTVAFKCNTQEQRTKLGWKSSKI 234
Query: 236 IVKEKEMKGSACVGAELLMSLLGNYCRNKGIKTSITVGVVGLPNVGKSSIINSLNRSKAC 295
+ S C+GAE L+ LL NY R+ +K +ITVG+VGLPNVGKSS+INSL RS+
Sbjct: 235 DKSSNIPQSSDCLGAENLIKLLKNYSRSHELKLAITVGIVGLPNVGKSSLINSLKRSRVV 294
Query: 296 NVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVALKNAIRVGSLKDPVTPAT 355
NVGSTPGVT+ MQ VQLD K+K+LD PG+V S +VAL+N RV ++DP++P
Sbjct: 295 NVGSTPGVTRSMQEVQLDKKVKLLDCPGVVMLKSSNSGVSVALRNCKRVEKMEDPISPVK 354
Query: 356 AILQRANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWNIGK 415
IL + L LYR+P F++ +F ++A G+ KKGG+ D EAA+RI+L+DWN GK
Sbjct: 355 EILDLCPHEKLLSLYRVPTFTSVDDFLQKVATLRGKLKKGGIVDVEAAARIVLHDWNEGK 414
Query: 416 VRYFTEPPETADADIHVDAQIVASIAKEFDINSFEAMETDIVNSLNTDSTKIEPIKITST 475
+ YFT PP+ DA DA I++ KEF+I+ E+ + L + + I+I S
Sbjct: 415 IPYFTVPPK-RDAVDDSDAVIISETGKEFNIDEIYKAESSYIGGLKS-LEEFRHIEIPSN 472
Query: 476 GPV---AAVLPDHMQVDEEDSSMLPKALNIRNRLDKTGKSQEKTKADPEMLLEGNL 528
P +L D + +E ++++ N + + T+ D EG L
Sbjct: 473 APPQIDEEMLEDGKKQNEPAQENHDESMSDANEREGAKTASASTQNDKLYTAEGIL 528
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 188 bits (457), Expect = 1e-47
Identities = 103/293 (35%), Positives = 164/293 (55%), Gaps = 26/293 (8%)
Query: 137 QENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESGKR--LVLVLNKAD 194
++ K + E KVI ++V+++++DARDP+GTRC +E+ ++E+ K LV +LNK D
Sbjct: 205 EKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCYHLEKHLKENAKHKHLVFLLNKCD 264
Query: 195 LVPRDNLTAWLKYLRQSAPAVPFKASTQDQQHNLGRRKMKHIVKEKEMKGSACVGAELLM 254
LVP WL+ L + P + F AS + G KGS L+
Sbjct: 265 LVPAWATKGWLRTLSKDYPTLAFHASINS---SFG-------------KGS-------LL 301
Query: 255 SLLGNYCRNKGIKTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDS 314
S+L + R K K +I+VG VG PNVGKSS+IN+L C V PG TK Q + L
Sbjct: 302 SVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRSKSVCKVAPIPGETKVWQYITLTK 361
Query: 315 KIKILDSPGIVFQSGPESDSTVALKNAIRVGSLKDPVTPATAILQRANKQTLQDLYRIPD 374
+I ++D PG+V+Q+ +S++ + LK +RV +L D +L+R K+ L+ Y+I D
Sbjct: 362 RIFLIDCPGVVYQNN-DSETDIVLKGVVRVTNLADASEHIGEVLRRVKKEHLKRAYKIED 420
Query: 375 FSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWNIGKVRYFTEPPETAD 427
+ +F QL++ G+ +GG PD ++++L+DW GK+ +F PP+ +
Sbjct: 421 WVDDNDFLVQLSKTTGKLLRGGEPDLTTTAKMVLHDWQRGKIPFFVPPPQQGE 473
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 112 bits (270), Expect = 6e-25
Identities = 91/322 (28%), Positives = 147/322 (45%), Gaps = 37/322 (11%)
Query: 145 YREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRE--SGKRLVLVLNKADLVPRDNLT 202
+R+ +V+ +++++ +VDARDPL RC +E +E KR +L++NKADL+P +
Sbjct: 180 WRQLWRVLERSDLLVMVVDARDPLFYRCPDLEVYAQEIDEHKRTLLLVNKADLLPLNVRQ 239
Query: 203 AWLKYLRQSAPAVPF---KASTQDQQ-HNLGRRKMKH---------IVKEKEMKGSACVG 249
W +Y +Q F KA+T D + L M++ I E+
Sbjct: 240 RWAEYFKQHDILYLFWSAKAATADLEGKKLSSYSMENWNTADLDTKIYGRDELLVRLQGE 299
Query: 250 AELLMSLLGNYCRNKGIKTS-----------ITVGVVGLPNVGKSSIINSLNRSKACNVG 298
AE +++ G +G ++S + VG VG PNVGKSS IN+L K V
Sbjct: 300 AEYIVNQKGALRAEEGHESSRSDSVSTRPKHVVVGFVGYPNVGKSSTINALVGQKRTGVT 359
Query: 299 STPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVALKNAIRVGSLKDPVTPATAIL 358
STPG TK QT+ + ++ + D PG+VF S S + + + + +
Sbjct: 360 STPGKTKHFQTLVISEELILCDCPGLVFPSFSSSRHEMVACGVLPIDRMTKHRGAIQVVA 419
Query: 359 QRANKQTLQDLYRI--------PDFSTP---QEFFAQLAQRMGRFKKGGVPDQEAASRIL 407
R + L+ +Y+I S P E G G+PD+ A+R +
Sbjct: 420 NRVPRNVLEQIYKITLPKPKAYEQLSRPPTAAELLRAYCTSRGHVSHAGLPDETRAARQI 479
Query: 408 LNDWNIGKVRYFTEPPETADAD 429
L D+ GK+ +F PP D++
Sbjct: 480 LKDYLDGKIPHFELPPGDTDSE 501
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 92.3 bits (219), Expect = 1e-18
Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 22/198 (11%)
Query: 146 REFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESGKRLVLVLNKADLVPRDNLTAWL 205
+E K+ + +V++E+ DAR PL T +++ + ++ ++V+N+ D+V ++ AW
Sbjct: 295 KELKEQLKLMDVVIEVRDARIPLATSHPKMDAWL--GNRKRIIVMNREDMVSNEDRNAWA 352
Query: 206 KYLRQSAPAVPFKASTQDQQHNLGRRKMKHIVKEKEMKGSACVGAELLMSLLGNYCRNKG 265
Y V + + Q +G K+ + K L S + R KG
Sbjct: 353 SYFANQGTKVVY----SNGQLGMGTMKLGRMAKS-------------LASTVNTKRREKG 395
Query: 266 -IKTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGI 324
+ ++ G+VG PNVGKSS+IN L + + C PGVT++++ V+ S +++LDSPGI
Sbjct: 396 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELKWVRFGSDLELLDSPGI 455
Query: 325 VFQSGPESDSTVALKNAI 342
+ SD T A+K AI
Sbjct: 456 LPMR--ISDQTAAIKLAI 471
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 82.6 bits (195), Expect = 8e-16
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 270 ITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSG 329
+ VG VG PNVGKSS IN+L K V TPG TK QT+ + ++ + D PG+VF S
Sbjct: 314 VVVGFVGYPNVGKSSTINALVGEKKTGVTHTPGKTKHFQTLIISEELTLCDCPGLVFPSF 373
Query: 330 PESDSTVALKNAIRVGSLKDPVTPATAILQRANKQTLQDLYRI------PDFS-----TP 378
S + + + + + R + L+ +Y+I P S T
Sbjct: 374 SSSRHEMVSCGVLPIDRMTKHREAIQVVADRVPRSVLEQIYKITLPKPKPYESQSRPPTA 433
Query: 379 QEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWNIGKVRYFTEPPETADAD 429
E G G+PD+ A+R +L D+ GK+ +F PP D +
Sbjct: 434 AELLRAYCASRGHVSHAGLPDETRAARQILKDYIDGKIPHFELPPGMVDTE 484
Score = 50.8 bits (116), Expect = 3e-06
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 145 YREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRE--SGKRLVLVLNKADLVPRDNLT 202
+R+ +V+ +++++ +VDARDPL RC +E +E KR ++++NKADL+P +
Sbjct: 163 WRQLWRVLERSDLLVMVVDARDPLFYRCPDLEVYAKEIDEHKRTMILVNKADLLPMNIRK 222
Query: 203 AWLKYLR 209
W Y +
Sbjct: 223 KWADYFK 229
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 68.9 bits (161), Expect = 1e-11
Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 31/222 (13%)
Query: 146 REFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESGKRLVLVLNKADLVPRDNLTAWL 205
R + + A+++LE+ DAR PL + ++ + + KR +L LNK DL + + WL
Sbjct: 22 RAIRDRLKLADLVLEVRDARIPLSSANEDLQPVL--ASKRRILALNKKDLANPNIMNRWL 79
Query: 206 KYL---RQSAPAVPFKASTQDQQHNLGRRKMKHIVKEKEMKGSACVGAELLMSLLGNYCR 262
+ +Q ++ +++ Q + G H+V+ + +G L+
Sbjct: 80 HHFESCKQDCISINAHSTSSVSQFSWG-----HLVEVYYLYFYKLLG---LVEFKLKEAI 131
Query: 263 NKGIKTSITVGVVGLPNVGKSSIINSLNR-----------SKACNVGSTPGVTKQMQTVQ 311
+K + ++ V VVG+PNVGKS++INS++R +K VG PGVT+ + +
Sbjct: 132 SK--EPTLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDIAGYK 189
Query: 312 LDSK--IKILDSPGIVFQSGPESDSTVALKNAIRVGSLKDPV 351
+ S+ I +LD+PG++ S P D LK A+ G++KD V
Sbjct: 190 ISSQPSIYVLDTPGVLVPSIP--DMETGLKLAL-TGAVKDSV 228
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 60.1 bits (139), Expect = 5e-09
Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 38/220 (17%)
Query: 146 REFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESGKRLVLVLNKADLVPRDNLTAWL 205
R + + +++LE+ DAR P + + E +R ++VLNKADL W+
Sbjct: 33 RAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADLADPSQTEKWM 92
Query: 206 KYLRQ-SAPAVPFKASTQDQQHNLGRRKMKHIVKEKEMKGSACVGAELLMSLLGNYCRNK 264
Y++Q S V + +++ L ++ ++E ++ S C G
Sbjct: 93 AYMKQTSCSCVALNSHSREGIKEL-LNAVRAKIREIKLGESDCTG--------------- 136
Query: 265 GIKTSITVGVVGLPNVGKSSIINSLNR-----------SKACNVGSTPGVTKQMQTVQLD 313
TV +VG+PNVGKS+I+N+++R K V S PG TK + ++
Sbjct: 137 ------TVLLVGIPNVGKSAIVNAMHRIGRIGAAEKGKLKHAIVSSHPGETKDISGYKVA 190
Query: 314 S--KIKILDSPGIVFQ--SGPESDSTVALKNAIRVGSLKD 349
S I +LD+PG++ ES +AL AI+ +++
Sbjct: 191 SHPNIYVLDTPGVLSPVFFNDESGPLLALTGAIKDSMMQE 230
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 41.1 bits (92), Expect = 0.002
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 272 VGVVGLPNVGKSSIINSLNRS-KACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVF 326
+ G+ NVGKSS++N+L R PG+T+ + +L SK+ ++D PG F
Sbjct: 397 IAFAGVSNVGKSSLLNALTRQWGVVRTSDKPGLTQTINFFRLASKLCLVDLPGYGF 452
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 41.1 bits (92), Expect = 0.002
Identities = 23/68 (33%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 267 KTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTK-QMQT-VQLDSK-IKILDSPG 323
K + + +VG PNVGKS+++N+L + + VG G+T+ ++T Q D++ + ++D+ G
Sbjct: 309 KLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRTQFQFDNRTVYLVDTAG 368
Query: 324 IVFQSGPE 331
+ +SG E
Sbjct: 369 WMERSGKE 376
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 39.9 bits (89), Expect = 0.006
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 263 NKGIKTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLD---SKIKIL 319
+K +++ + V ++G PNVGKSS++N+ ++S+ V G T+ + + I +L
Sbjct: 299 DKLLQSGLQVAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEANVSIHGIPITLL 358
Query: 320 DSPGI 324
D+ GI
Sbjct: 359 DTAGI 363
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 39.5 bits (88), Expect = 0.007
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 269 SITVGVVGLPNVGKSSIINSLNRSKACNVG-STPGVTKQMQTVQLD--SKIKILDSPGIV 325
S++VG+VG PN GKSS+ N++ +K V T T ++ V ++I D+PG++
Sbjct: 148 SLSVGIVGAPNAGKSSLTNTMVGTKVAAVSRKTNTTTHEILGVLTKGITQICFFDTPGLM 207
Query: 326 F--QSGPESDSTVALKNA 341
P D TV +++A
Sbjct: 208 LGHHGLPHRDVTVRVESA 225
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 39.1 bits (87), Expect = 0.010
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 272 VGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQM----QTVQLDSKIKILDSPGI--- 324
+ +VG PNVGKSSI+N+L V G T+ T + K K++D+ GI
Sbjct: 376 IAIVGRPNVGKSSILNALVGEDRTIVSPVSGTTRDAIDTEFTTEDGQKYKLIDTAGIRRR 435
Query: 325 -VFQSGPESDSTVALKNAIRVGSLKDPV 351
S + T+++K A R D V
Sbjct: 436 AAVASAGSTTETLSVKRAFRAIRRSDVV 463
Score = 37.9 bits (84), Expect = 0.022
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 272 VGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQM---QTVQLDSKIKILDSPGIVFQS 328
V ++G PNVGKS++ N L V PGVT+ ++ D + ++D+ G++ S
Sbjct: 163 VAIIGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRSYWGDREFMVIDTGGVITLS 222
Query: 329 GPESDSTVALKNAIRVGSLKDPVTPATAILQR 360
++ L VG P+ A + R
Sbjct: 223 KSQAGVMEELAITTTVGMDGIPLASREAAIAR 254
Score = 33.5 bits (73), Expect = 0.48
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 150 KVISEAEVILEIVDARDPLGTRCIQVEEAVRESGKRLVLVLNKADLVPRDN 200
+ I ++V+ +V+A + + ++ E + + GK V+V+NK D +P N
Sbjct: 455 RAIRRSDVVALVVEAMACITEQDYKIAERIEKEGKACVIVVNKWDTIPNKN 505
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 38.7 bits (86), Expect = 0.013
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 262 RNKGIKTSITVGVVGLPNVGKSSIINSLNRS 292
RN I S+ G+VGLPNVGKS++ N++ R+
Sbjct: 53 RNARISMSLRAGIVGLPNVGKSTLFNAIVRN 83
>10_08_0842 - 20954712-20957738
Length = 1008
Score = 37.1 bits (82), Expect = 0.039
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 263 NKGIKTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTV--QLDS-KIKIL 319
N+ + S T+ V+G VGKS+ INS+ + T+++Q V ++ K+K++
Sbjct: 377 NEPLDFSCTILVLGKTGVGKSATINSIFDDVRLETNAFDTSTRKVQEVVGAVEGIKVKVI 436
Query: 320 DSPGIVFQSGPESDSTVALKNAIRVGSLKDP 350
D+PG+ S + + L + R+ S P
Sbjct: 437 DTPGLSCSSSDQHHNQKILNSVKRLISRNPP 467
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 36.3 bits (80), Expect = 0.068
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 245 SACVGAELLMSLLG-NYCRNKGIKTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGV 303
S C+ E LG ++C N S V V+G PNVGKS++IN + K V P
Sbjct: 103 SLCLLDEYESEELGTSHCANH---RSGYVAVLGKPNVGKSTLINQIVGQKLSIVTDKPQT 159
Query: 304 TKQM---QTVQLDSKIKILDSPGIVFQSGPESDSTVALKN 340
T+ + + +I + D+PG++ + + D T+ +KN
Sbjct: 160 TRHRILGICSEPEYQIILYDTPGVIKKEMHKLD-TMMMKN 198
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 35.9 bits (79), Expect = 0.090
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 271 TVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQM---QTVQLDSKIKILDSPGIVFQ 327
T+ +VG PNVGKSS++ L+ K V S P T+ + V + ++ D+PG++ +
Sbjct: 246 TLCLVGSPNVGKSSLVRILSSGKP-EVCSYPFTTRGILMGHIVSNHERFQVTDTPGLLTR 304
Query: 328 SGPESDSTVALKNAI 342
E ++ L A+
Sbjct: 305 DDDERNNIEKLTLAV 319
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 35.9 bits (79), Expect = 0.090
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 264 KGIKTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQ--LDS-KIKILD 320
K + S + V+G VGKS++INS+ + + + G T ++ V +D K+ I+D
Sbjct: 4908 KDLSFSCNILVLGKIGVGKSTVINSIMGEEKNKINAFDGATTNVRLVSSVVDGIKVNIID 4967
Query: 321 SPGI 324
+PG+
Sbjct: 4968 TPGL 4971
>03_02_0267 +
6990674-6990890,6991692-6991761,6991824-6991913,
6992635-6992797,6992910-6993137
Length = 255
Score = 35.5 bits (78), Expect = 0.12
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 274 VVGLPNVGKSSIINSL-NRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPG 323
V+G NVGKSS+IN+L R +A PG T+ + ++ ++D PG
Sbjct: 44 VLGRSNVGKSSLINALIRRKEAALTSKKPGKTQTINHFLVNKSWYLVDLPG 94
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 34.7 bits (76), Expect = 0.21
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 266 IKTSITVGVVGLPNVGKSSIINSLNRSK---ACNVGSTPGVTKQMQTVQLDSKIKILDSP 322
+K+ VG+VG+PN GKS+++++L+R++ A +T T + +K+ D P
Sbjct: 336 LKSIADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTYEDYFSVKVADIP 395
Query: 323 GIV 325
G++
Sbjct: 396 GLI 398
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 33.5 bits (73), Expect = 0.48
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 266 IKTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVT--KQMQTVQL--DSKIKILDS 321
+K VG+VG PN GKS+++ +++ +K + + P T + V L D+ + + D
Sbjct: 449 LKLVADVGIVGAPNAGKSTLLTAISAAKP-TIANYPFTTLLPNLGVVSLDFDATMVVADL 507
Query: 322 PGIV 325
PG++
Sbjct: 508 PGLL 511
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 33.5 bits (73), Expect = 0.48
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 272 VGVVGLPNVGKSSIINSLNR--SKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIV 325
VG+VG P+VGKS+++N L S+ T + +KI++LD PGI+
Sbjct: 78 VGLVGFPSVGKSTLLNKLTGTFSEVAAYEFTTLTCIPGVIMYKGAKIQLLDLPGII 133
>07_01_0075 - 558829-560859
Length = 676
Score = 33.5 bits (73), Expect = 0.48
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 271 TVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSK---IKILDSPGIV 325
T+ + G PNVGKSS +N + R+ +V TK + D K +++D+PGI+
Sbjct: 170 TLLICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
>06_01_0668 - 4882174-4884204
Length = 676
Score = 33.5 bits (73), Expect = 0.48
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 271 TVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSK---IKILDSPGIV 325
T+ + G PNVGKSS +N + R+ +V TK + D K +++D+PGI+
Sbjct: 170 TLLICGYPNVGKSSFMNKITRADV-DVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 33.1 bits (72), Expect = 0.63
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 272 VGVVGLPNVGKSSIINSL--NRSKACNVGSTPGVTKQMQTVQL-DSKIKILDSPGIV 325
V ++G P+VGKS+++ L S+A + T +T +Q D+KI++LD PGI+
Sbjct: 65 VALIGFPSVGKSTLLTMLTGTHSEAASYEFTT-LTCIPGIIQYNDTKIQLLDLPGII 120
>03_02_0315 -
7401708-7401860,7401962-7402123,7402211-7402279,
7403332-7403596,7404613-7404737,7404826-7404933,
7405102-7405249,7406013-7406065
Length = 360
Score = 33.1 bits (72), Expect = 0.63
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 253 LMSLLGNYCRNKGIKTSITVGVVGLPNVGKSSIINSLNRSKACNVGS--TPGVTKQM-QT 309
L LLG + + + T +T+ V+G VGKSS +NS+ + V + + G+ M
Sbjct: 57 LHELLGKL-KEENVST-LTILVMGKGGVGKSSTVNSIVGERVATVSAFQSEGLRPMMCSR 114
Query: 310 VQLDSKIKILDSPGIVFQSGPESDSTVALKNAIRVGSLKD 349
+ + I+D+PG++ + G ++ V + +G D
Sbjct: 115 TRAGFTLNIIDTPGLI-EGGYINEQAVEIIKRFLLGKTID 153
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 32.3 bits (70), Expect = 1.1
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 272 VGVVGLPNVGKSSIINSLNRSKACNV-----GSTPGVTKQMQTVQ--LDSKIKILDSPGI 324
V V+G N GKS++IN+ + + + + PG T + + L +K K+ D+PG+
Sbjct: 410 VWVIGAQNAGKSTLINAFAKKQGVKITRLTEAAVPGTTLGILRITGVLPAKAKMYDTPGL 469
Query: 325 V 325
+
Sbjct: 470 L 470
>05_07_0143 +
28000038-28000211,28002217-28002230,28002713-28002788,
28003304-28003865,28004476-28004761,28004848-28005118,
28005478-28005633,28005871-28006368,28006809-28007093
Length = 773
Score = 31.9 bits (69), Expect = 1.5
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 447 NSFEAMETDIVNSLNTDSTKIEPIKITSTGPVAAVLPDHMQVDEED 492
NS A+ T+ L+ + ++ P K+ P A ++PDH+QV D
Sbjct: 280 NSDVALATENFQGLSLHNEELVPTKLAEDNP-AVIIPDHLQVTGSD 324
>03_05_0201 + 21924279-21925205,21925700-21926320
Length = 515
Score = 31.5 bits (68), Expect = 1.9
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 165 RDPLGTRCIQVEEAVRES--GKRLVLVLNKADLVPRDNLTAWLK-YLRQSAPAVPFKAST 221
R +G RC + +E +RE RL N ADL P +L WL LR++
Sbjct: 202 RSAIGGRCARRDEFLRELEVSVRLTGGFNLADLYPSSSLARWLSGALRET---------- 251
Query: 222 QDQQHNLGRRKMKHIVKEKEMKGSACVGAELLMSLLGNYCRNKGIKTSITVGVV 275
+Q + R M I++E+ G + L+ +L +N G++ +T ++
Sbjct: 252 -EQCNRRVRAIMDDIIRERAAGKDDGDGEDDLLGVLLRLQKNGGVQCPLTTDMI 304
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 31.1 bits (67), Expect = 2.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 423 PETADADIHVDAQIVASIAKEFDINSFEAMETDIVNSLNTDSTKIEPIKITSTGPVAAVL 482
PE +DA HVD+ ++ + D+NS + E + NS + +++ P +
Sbjct: 2485 PELSDA--HVDS---TTMNTDVDMNSIDISENQVENSAPGLYGNVVSVRLDEGAPQETMQ 2539
Query: 483 PDHMQVDEEDSS 494
PD + + E SS
Sbjct: 2540 PDQLNANNEASS 2551
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 31.1 bits (67), Expect = 2.6
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 461 NTDSTKIEPIKITSTGPVAAVLPDHMQVDEEDSSMLPKALNIRNRLDKTGKSQEKTKADP 520
N D K+ P +I PD + +DE++ ML +A R RL T + K KA
Sbjct: 135 NDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEA---RARLANTRGKKAKRKARE 191
Query: 521 EMLLE 525
+ L E
Sbjct: 192 KQLEE 196
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 31.1 bits (67), Expect = 2.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 266 IKTSITVGVVGLPNVGKSSIINSL-NRSKACNVGSTPGVT--KQMQTVQLDSKIKILDSP 322
++ S V V+G VGKS+ INS+ K+ P T K++ V K +++D+P
Sbjct: 581 LEFSCNVLVLGKTGVGKSATINSIFGEDKSKTSAFLPATTAVKEISGVVGGVKFRVVDTP 640
Query: 323 GI 324
G+
Sbjct: 641 GL 642
>08_02_1214 +
25333861-25334083,25334916-25335159,25335258-25335345,
25335731-25335953,25336073-25336164,25336293-25336544
Length = 373
Score = 30.7 bits (66), Expect = 3.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 337 ALKNAIRVGSLKDPVTPATAILQRANKQTLQDLYRIPDFSTPQEFFAQLAQRMG 390
A+K+ IRV K+ V A+L+ N + + D TP EF L + G
Sbjct: 68 AVKDMIRVQRPKEQVADGEALLELVNSLAITAKSKKKDGPTPSEFVTSLLTKFG 121
>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 30.3 bits (65), Expect = 4.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 266 IKTSITVGVVGLPNVGKSSIINSLNR-SKACN 296
I + + VG++G GKSSI+N+L R + CN
Sbjct: 1146 ISSGMQVGIIGRTGAGKSSILNALLRLAPICN 1177
>02_05_0639 -
30552148-30552265,30552362-30552523,30553177-30553298,
30553515-30553596,30554407-30554699
Length = 258
Score = 30.3 bits (65), Expect = 4.5
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 244 GSACVGAELLMSLLGNYCRNKGI-----KTSITVGVVGLPNVGKSSIINSL 289
G CV + S +G C+N+ + K + + +VGL N GK+S++N++
Sbjct: 75 GVVCVACAV-RSRIGKACQNRIVVSLFFKQEMELSLVGLQNAGKTSLVNAV 124
>01_06_0966 - 33453963-33456692
Length = 909
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 237 VKEKEMKGSACVGAELLMSLLGNYCRNKGIKTSITVGVVGLPNVGKSSIINSLNRSKACN 296
V+ +EM +A VG + ++ L R+ + VG+ G+ VGK++++N N N
Sbjct: 139 VRFEEMPSAAVVGMDAVLQRLHACVRHGDVGI---VGIYGMAGVGKTALLNKYNNDFLIN 195
>01_06_0603 +
30530486-30530984,30531174-30531202,30531484-30531660,
30533662-30533745,30534059-30534277
Length = 335
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 274 VVGLPNVGKSSIINSLNRSKACNVGS-TPGVTK 305
+VG NVGKSS++NSL R K + S PG T+
Sbjct: 138 LVGRSNVGKSSLLNSLVRRKRLALTSKKPGKTQ 170
>06_03_0014 -
15403508-15403648,15404091-15404204,15404253-15404339,
15404448-15404577,15404693-15404934,15410335-15410400
Length = 259
Score = 29.9 bits (64), Expect = 5.9
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 5/151 (3%)
Query: 295 CNVG--STPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVALKNAIRVGSLKDPVT 352
C +G S VT M+ L ++ ++ G G + + + R P
Sbjct: 14 CRIGLCSATNVTTGMRASGLQDQVALVSIGGWTPNQGVLQPAIIVNPSFSRHRRGLCPGR 73
Query: 353 PATAILQRANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWN 412
P A + + +TL + + ST ++ Q+ R G+ G D E + L + +
Sbjct: 74 PYWAASMQLSNRTLSTELKPMELSTTEQGNRQVQLR-GK-SMGTAIDSEPTAIDLFKELH 131
Query: 413 IGKVRYFTEPPETADADIHVDAQIVASIAKE 443
K + F+EP + A D+H +I+ S + E
Sbjct: 132 CSKTKGFSEPVKKAIEDMHAQ-EILTSPSVE 161
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 29.5 bits (63), Expect = 7.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 270 ITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSK 315
+ +GV+G VGKS+I+N L + G P Q + ++ +K
Sbjct: 93 MVIGVIGPTGVGKSTIMNELYGYDGSSPGMLPPFATQTEEIKAMAK 138
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 29.5 bits (63), Expect = 7.8
Identities = 10/22 (45%), Positives = 19/22 (86%)
Query: 272 VGVVGLPNVGKSSIINSLNRSK 293
VG+VGLPN GKS++++++ ++
Sbjct: 279 VGLVGLPNAGKSTLLSAITLAR 300
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,294
Number of Sequences: 37544
Number of extensions: 516742
Number of successful extensions: 1187
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 54
length of query: 586
length of database: 14,793,348
effective HSP length: 86
effective length of query: 500
effective length of database: 11,564,564
effective search space: 5782282000
effective search space used: 5782282000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -