Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000474-TA|BGIBMGA000474-PA|IPR002917|GTP-binding
protein, HSR1-related, IPR005289|GTP-binding, IPR006073|GTP1/OBG
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 254 2e-67
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 158 1e-38
SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07) 50 4e-06
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 6e-04
SB_9948| Best HMM Match : Autophagy_N (HMM E-Value=4.9) 39 0.010
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 38 0.022
SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1) 38 0.030
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.069
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 34 0.28
SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 33 0.48
SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24) 33 0.84
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 32 1.1
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 2.6
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36) 31 2.6
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026) 31 2.6
SB_34250| Best HMM Match : DUF1168 (HMM E-Value=1.3) 31 2.6
SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42) 31 2.6
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) 31 3.4
SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.4
SB_59414| Best HMM Match : Complex1_LYR (HMM E-Value=7.7) 30 4.5
SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 4.5
SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0) 30 4.5
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 30 4.5
SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.5
SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26) 30 6.0
SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05) 30 6.0
SB_7293| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 6.0
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.9
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 254 bits (621), Expect = 2e-67
Identities = 130/232 (56%), Positives = 169/232 (72%), Gaps = 7/232 (3%)
Query: 125 PSQDVEFGK-DRKQENSLKTYYREFK--KVISEAEVILEIVDARDPLGTRCIQVEEAVRE 181
P Q+ E + ++ +E L+ +E K V+ A+VILE++DARDP+G RC QVE+AV
Sbjct: 305 PKQEEEDDRINQAEEAILRQMNKELKFAGVVEAADVILEVLDARDPIGCRCPQVEQAVIA 364
Query: 182 SG--KRLVLVLNKADLVPRDNLTAWLKYLRQSAPAVPFKASTQDQQHNLGRRKMKHIVKE 239
+G K+LVL+LNK DLVP+D WLKYLR PAV FKASTQ Q+ NL K+ +
Sbjct: 365 AGATKKLVLILNKIDLVPKDIAEKWLKYLRNEFPAVIFKASTQTQKQNLSHSKVPVSLAG 424
Query: 240 KE-MKGSACVGAELLMSLLGNYCRNKGIKTSITVGVVGLPNVGKSSIINSLNRSKACNVG 298
K+ + S+C+GAE L+ LLGNYCRNK IKTSITVGVVG PNVGKSSIINSL RS+ C VG
Sbjct: 425 KDVLSSSSCLGAETLLKLLGNYCRNKDIKTSITVGVVGFPNVGKSSIINSLKRSRTCTVG 484
Query: 299 STPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDSTVALKNAIRVGSLKDP 350
+TPGVTK MQ VQLD IK+LDSPGIV +G +SD+ + L+N +++ +++DP
Sbjct: 485 ATPGVTKSMQEVQLDKHIKLLDSPGIVMDTG-DSDAAIILRNCVKIENIEDP 535
Score = 41.9 bits (94), Expect = 0.001
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 412 NIGKVRYFTEPPETADADIHVDAQIVASIAKEFDIN----SFEAMETDIVN 458
N GK++++T PPE H+ A++VA +KEFD++ +A E D+++
Sbjct: 549 NSGKIQFYTHPPEEHKLPTHISAEVVAEWSKEFDLDDDNEDDDAEEDDVID 599
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 158 bits (383), Expect = 1e-38
Identities = 101/329 (30%), Positives = 170/329 (51%), Gaps = 33/329 (10%)
Query: 102 LNTLVTNAQARGKVHEAF--KGDSEPSQD-VEFGKDRKQENSLKTYYR-EFKKVISEAEV 157
L+ L AQ ++ ++ K + E +D V D + E Y + + K++ +E
Sbjct: 20 LSLLDERAQGLAEMAQSLTEKYNEENDKDLVREDLDERPEAKESIYSKGQSKRIWNE--- 76
Query: 158 ILEIVDARDPLGTRCIQVEEAVRE--SGKRLVLVLNKADLVPRDNLTAWLKYLRQSAPAV 215
+ +++DARDPLGTR +E +++ S K L+ +LNK DLVP W+ L + P +
Sbjct: 77 LYKVLDARDPLGTRSKHIETFIKKEKSHKHLIFILNKCDLVPTWVTQQWVSVLSEEHPTL 136
Query: 216 PFKASTQDQQHNLGRRKMKHIVKEKEMKGSACVGAELLMSLLGNYCRNKGIKTSITVGVV 275
F AS + G L++LL + + K I+VG++
Sbjct: 137 AFHASVTNP-----------------------FGKGALINLLRQFSKLHSDKKQISVGLI 173
Query: 276 GLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESDST 335
G PNVGKSSIIN+L K C V G TK Q + L +I ++D PG+V+ +G ++++
Sbjct: 174 GYPNVGKSSIINTLKAKKVCKVAPIAGETKVWQYITLMRRIYLVDCPGVVYPTG-DTETE 232
Query: 336 VALKNAIRVGSLKDPVTPATAILQRANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKG 395
+ LK +RV ++K+ +L+R ++ L YR+ + +F Q+++R G+ KG
Sbjct: 233 IILKGVVRVENVKEAAEHIPTVLERVKREYLAKTYRVQAWDDCTDFLEQVSRRSGKLLKG 292
Query: 396 GVPDQEAASRILLNDWNIGKVRYFTEPPE 424
G PD ++++LND+ GK+ YF PP+
Sbjct: 293 GEPDINTVAKMILNDFQRGKLPYFVAPPK 321
>SB_57810| Best HMM Match : MMR_HSR1 (HMM E-Value=3.6e-07)
Length = 299
Score = 50.4 bits (115), Expect = 4e-06
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 271 TVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTV 310
T+G+VG PNVGKSS IN++ +SK V STPG TK Q V
Sbjct: 162 TIGLVGYPNVGKSSTINTILQSKKVAVSSTPGRTKHFQYV 201
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 43.2 bits (97), Expect = 6e-04
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 270 ITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDS---KIKILDSPGIVF 326
+ V ++G PN GKS++IN L K V P T+Q+ S +I +LD+PG+V
Sbjct: 40 LKVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVT 99
Query: 327 QSGPESDSTVALKNAIRV-GSLKDPVTPATAILQRANKQTLQDLYR 371
QS E + I+ G D I +NK+T +++
Sbjct: 100 QS--EGKRLKMTREHIKAPGDALDDADIIGVICDASNKRTRDRIHQ 143
>SB_9948| Best HMM Match : Autophagy_N (HMM E-Value=4.9)
Length = 166
Score = 39.1 bits (87), Expect = 0.010
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 156 EVILEIVDARDPLGTRCIQVEEAVRESG--KRLVLVLNKADLVPRDNLTAWLKYLRQSAP 213
+VI++IVDAR+P RC + V+E K +L++NKAD + W +Y +
Sbjct: 2 DVIVQIVDARNPELFRCEDLAVYVKEVNPLKANLLLINKADYLTPSQRLKWAEYYKSRNI 61
Query: 214 AVPFKASTQDQQ 225
V F ++ D +
Sbjct: 62 QVAFWSALADNE 73
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 37.9 bits (84), Expect = 0.022
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 272 VGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTK 305
V VVG PNVGKS+++N + +A V PGVT+
Sbjct: 24 VAVVGRPNVGKSTLVNRILGRRAAVVQDVPGVTR 57
>SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 346
Score = 37.5 bits (83), Expect = 0.030
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 156 EVILEIVDARDPLGTRCIQVEEAVRESG--KRLVLVLNKADLVPRDNLTAWLKYLRQSAP 213
+VI++IVDAR+P RC + V+E K +L++NKAD + W +Y +
Sbjct: 135 DVIVQIVDARNPELFRCEDLAVYVKEVNPLKANLLLINKADYLTPSQRLKWAEYYKSRNI 194
Query: 214 AVPFKASTQDQQ 225
V F ++ + +
Sbjct: 195 QVAFWSALAENE 206
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 36.3 bits (80), Expect = 0.069
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 271 TVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKI---KILDSPGIVFQ 327
T+ V G PNVGKSS +N + R+ +V TK + +D K +++D+PG V
Sbjct: 85 TLLVCGFPNVGKSSFMNKVTRADV-DVQPYAFTTKSLFVGHMDYKYLRWQVVDTPG-VLD 142
Query: 328 SGPESDSTVALKNAIRVGSLKDPVTPATAILQR 360
E +T+ ++ + L+ V T I ++
Sbjct: 143 HPLEERNTIEMQAITALAHLRSAVLYVTDISEQ 175
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 34.3 bits (75), Expect = 0.28
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 4/161 (2%)
Query: 374 DFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWNIGKVRYFTEPPETADADIHV- 432
DF Q+ +L G+ ++ + D E A+ L ND K D ++
Sbjct: 1264 DFKKSQKRILELQYHQGQLERK-ITDLETANERLKNDKKDLKADLIAANATITDLELKTE 1322
Query: 433 --DAQIVASIAKEFDINSFEAMETDIVNSLNTDSTKIEPIKITSTGPVAAVLPDHMQVDE 490
D +IV+ + D S +M D L ++ + TS + Q+
Sbjct: 1323 FSDKEIVSLKKQLDDAMSRGSMGKDDYRKLQQQLVEMRVLVETSQAKLNEKDNQIQQLLT 1382
Query: 491 EDSSMLPKALNIRNRLDKTGKSQEKTKADPEMLLEGNLKQN 531
+ + N++ +DKT K +E KAD + L N+K N
Sbjct: 1383 SKDFLEDEIDNLKAAIDKTEKEKEDLKADIDELKAENIKLN 1423
>SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 1328
Score = 33.5 bits (73), Expect = 0.48
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 234 KHIVKEKEMK------GSACVGAELLMSLLGNYCRNKGIKTSIT 271
KH VKE EMK G+ VG E+L+ L+ C N G+ IT
Sbjct: 113 KHEVKEPEMKYTANIHGNEVVGKEMLLHLIRYLCHNYGVNKRIT 156
>SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24)
Length = 478
Score = 32.7 bits (71), Expect = 0.84
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 443 EFDINSFEAMETDIVNSLNTDSTKIEPIKITSTGPVAAVLPDHMQVDEEDSSMLPKALNI 502
E+ ++ +A E D D K+ P +I PD + +DE++ ML +A
Sbjct: 101 EYLLDQAQAKEGD--KDEGDDPRKLRPGEIDPNPETKPARPDPIDMDEDELEMLSEA--- 155
Query: 503 RNRLDKTGKSQEKTKADPEMLLEGNLKQN 531
R RL T + K KA + L E +++++
Sbjct: 156 RARLANTQGKKAKRKAREKQLEEASIRKH 184
>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 1788
Score = 32.3 bits (70), Expect = 1.1
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 357 ILQRANKQTLQDLYRIPDFSTPQEFFAQLAQRMGRFKKGGVPDQEAASRILLNDWN---- 412
IL+RAN +Q IP+F P +A + RFK+ + AS+ +L+D+N
Sbjct: 1210 ILKRANDLHIQV---IPEFDMPGHGYAAIKSMEARFKRLKDSNPSEASKYILSDFNDTSK 1266
Query: 413 IGKVRYFTE 421
++YFT+
Sbjct: 1267 YLSIQYFTD 1275
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 31.1 bits (67), Expect = 2.6
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 470 IKITSTGPVAAVLPDHMQVDEEDSSMLPKALNIRNRLDKTGKSQEKTK 517
+ ++ G V + LPD +QVD+E+ L +L+++N D T +S+ + +
Sbjct: 3565 LSVSGKGRVPSDLPDGVQVDDENLQGLLFSLSVQNE-DSTDESRSRAR 3611
>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
Length = 365
Score = 31.1 bits (67), Expect = 2.6
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 272 VGVVGLPNVGKSSIINSLNRSK-ACNVGSTPGVTKQMQTVQLD-SKIKILDSPGIV 325
V ++G P+VGKS+++ L +++ AC +T + + + I++LD PGI+
Sbjct: 66 VALIGFPSVGKSTLLTKLTQTQSACASYEFTTLTCIPGVINYNGANIQLLDLPGII 121
>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
Length = 936
Score = 31.1 bits (67), Expect = 2.6
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 157 VILEIVDARDPLGTRCIQVEEAVRESGKRLVLVLNKADLVPRDNLTAWLKYLR 209
+IL +VD D G+ + + V + KR+V+V NK D++P+D WL+ R
Sbjct: 187 LILYVVDILDLPGSTFPHLLDIVGPA-KRIVIVANKVDMLPQDG-RPWLQEKR 237
>SB_34250| Best HMM Match : DUF1168 (HMM E-Value=1.3)
Length = 642
Score = 31.1 bits (67), Expect = 2.6
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 470 IKITSTGPVAAVLPDHMQVDEEDSSMLPKALNIRNRLDKTGKSQEKTK 517
+ ++ G V + LPD +QVD+E+ L +L+++N D T +S+ + +
Sbjct: 359 LSVSGKGRVPSDLPDGVQVDDENLQGLLFSLSVQNE-DSTDESRSRAR 405
>SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42)
Length = 275
Score = 31.1 bits (67), Expect = 2.6
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 262 RNKGIKTSITVG--VVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKIL 319
R K +K VVG +GKS+++N+L + K ST T +TV + S ++
Sbjct: 105 RRKSLKRGFEFNLMVVGASGLGKSTMVNTLFKGKLSRPTSTGKPTIIPKTVDVKSVSHVI 164
Query: 320 DSPGI 324
+ G+
Sbjct: 165 EEKGV 169
>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
Length = 303
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 272 VGVVGLPNVGKSSIINSLN--RSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIV 325
+G VG P+VGKS+++ +L S+ T T +KI++LD PGI+
Sbjct: 51 IGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGII 106
>SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 907
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 271 TVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGP 330
+VGV+G+ N K + N+ N+ + N S G K + DS + + G + G
Sbjct: 603 SVGVLGVSNFQKHNTANTRNKEQPMNHVSL-GYQKAPKGSSFDSSAPLSSTNGTSYHGGK 661
Query: 331 ESDSTVALK 339
S +TV ++
Sbjct: 662 PSKNTVNMQ 670
>SB_59414| Best HMM Match : Complex1_LYR (HMM E-Value=7.7)
Length = 350
Score = 30.3 bits (65), Expect = 4.5
Identities = 17/73 (23%), Positives = 33/73 (45%)
Query: 118 AFKGDSEPSQDVEFGKDRKQENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQVEE 177
AFKG +++ D + +Y+E K +A+VIL + D + ++ E
Sbjct: 44 AFKGPMPNFEEMYENVDATTDLPACIFYKEIFKAFPDAKVILSVRDDEESWRKSFLKTES 103
Query: 178 AVRESGKRLVLVL 190
V + L+++L
Sbjct: 104 IVSSATSNLLMIL 116
>SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 638
Score = 30.3 bits (65), Expect = 4.5
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 13/144 (9%)
Query: 108 NAQAR-GKVHEAFKGDSEPSQDVEFGKDRKQENSLKTYYREFK-KVISEAEVILEIVDAR 165
N+Q+R G+ HE + EP++ +++ R+ K K +++ V+ I
Sbjct: 15 NSQSRWGRRHEDSRSRMEPAE----------RHTISFASRDLKLKALTKRSVLSSISRLY 64
Query: 166 DPLG-TRCIQVEEAVRESGKRLVLVLNKADLVPRDNLTAWLKYLRQSAPAVPFKASTQDQ 224
DPLG + ++ V + D +P + WL L++ + +
Sbjct: 65 DPLGLASAVMIKARVALQEAWRAEQFDWDDPLPEETTVMWLSLLKEIKSLKEVQIPRCPK 124
Query: 225 QHNLGRRKMKHIVKEKEMKGSACV 248
HN G R H+ + K V
Sbjct: 125 PHNAGDRSELHVFADASCKAYGAV 148
>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 618
Score = 30.3 bits (65), Expect = 4.5
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 266 IKTSITVGVVGLPNVGKSSIINSLNR-SKACNVGSTPGVT-KQMQTVQLDSKIKILDSPG 323
IK S VGVVG GKSS++++L R ++ + G+ +++ L SK+ I+
Sbjct: 59 IKPSEKVGVVGRTGAGKSSLLSTLFRLAEPKGLIDIDGINIRKLGLKDLRSKLSIIPQDP 118
Query: 324 IVF 326
++F
Sbjct: 119 VLF 121
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 30.3 bits (65), Expect = 4.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 2 AKFKLKKPSKRQPARLRYKIEKKVKEHNRKQR 33
AK KKP+ QPA R K +K VK+ K R
Sbjct: 118 AKASTKKPTTAQPAAQRQKAQKNVKQMAAKPR 149
>SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 30.3 bits (65), Expect = 4.5
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 267 KTSITVGVVGLPNVGKSSIINSLNRSKAC-NVGSTPGV 303
K S V VVG P VGK+S+I + C N ST GV
Sbjct: 9 KYSFKVLVVGDPGVGKTSLIRRFTKGYFCDNSSSTVGV 46
>SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)
Length = 534
Score = 29.9 bits (64), Expect = 6.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 264 KGIKTSITVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVT 304
+G + +G++G P+ GKS+ N+ + V S P T
Sbjct: 147 QGGRWDYVIGLIGKPSAGKSTFFNAATQQNRARVASHPFTT 187
>SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05)
Length = 202
Score = 29.9 bits (64), Expect = 6.0
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 271 TVGVVGLPNVGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSK-IKILDSPGIVFQSG 329
+V V+G N GKS+ +N L + K V P ++ ++ +S ++++D G V Q
Sbjct: 65 SVIVIGNQNCGKSTFLNVLLKGKYLPVHENPCTSRIVRISYSESNFVQLVDEAGNVIQR- 123
Query: 330 PESDSTVALKNAIRVGSLKDPVTPATAILQ 359
+ V K A+ + K+ +AI++
Sbjct: 124 EKFKRKVPKKYAVLSDAAKESADNLSAIVE 153
>SB_7293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 390 GRFKKGGVPDQEAASRILLNDWNIGKVRYFTEPP 423
G G PD ++R +L D+ GK+ Y T PP
Sbjct: 35 GYMTSSGTPDCPRSARYILKDYVNGKLLYCTPPP 68
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 29.5 bits (63), Expect = 7.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 1 MAKFKLKKPSKRQPARLRYKIEKKVKEHNRKQR 33
+AK K K+ KR+ A+ R K +++ +H RKQ+
Sbjct: 203 LAKHKHKRKRKRESAKHRLKRKRESVKHKRKQK 235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,333,932
Number of Sequences: 59808
Number of extensions: 609086
Number of successful extensions: 1724
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1700
Number of HSP's gapped (non-prelim): 33
length of query: 586
length of database: 16,821,457
effective HSP length: 86
effective length of query: 500
effective length of database: 11,677,969
effective search space: 5838984500
effective search space used: 5838984500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
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