GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000474-TA|BGIBMGA000474-PA|IPR002917|GTP-binding
protein, HSR1-related, IPR005289|GTP-binding, IPR006073|GTP1/OBG
         (586 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   7.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   9.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   9.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 280 VGKSSIINSLNRSKACNVGSTPGVTKQMQTVQLDSKIKILDSPGIVFQSGPESD 333
           + K  +  +  +   C++ +TP + K+++ ++ D  IK   S G+     PE++
Sbjct: 269 ISKKKLSPATPKGSKCSMITTPEIKKEVEDMEYDD-IKTELSTGMNDDIPPETE 321


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 349 DPVTPATAILQRANKQTLQDLYRIPDFST 377
           D + P T    +A +  LQD+Y+I    T
Sbjct: 176 DAILPPTRPTDKALRLPLQDVYKIGGIGT 204


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 349 DPVTPATAILQRANKQTLQDLYRIPDFST 377
           D + P T    +A +  LQD+Y+I    T
Sbjct: 233 DAILPPTRPTDKALRLPLQDVYKIGGIGT 261


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,593
Number of Sequences: 429
Number of extensions: 4832
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 586
length of database: 140,377
effective HSP length: 61
effective length of query: 525
effective length of database: 114,208
effective search space: 59959200
effective search space used: 59959200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)