Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000473-TA|BGIBMGA000473-PA|IPR004859|Putative 5-3
exonuclease
         (1120 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    25   2.9  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    25   2.9  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
            candidate 13 protein.
          Length = 390

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 1005 DKQLEILNANERKITMQ-VKWNLLYKAELH 1033
            D  L + N N   +T++  KWNLL+K   H
Sbjct: 142  DVTLWLSNVNSLTLTLKRKKWNLLFKTLTH 171


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
            candidate 12 protein.
          Length = 316

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 1005 DKQLEILNANERKITMQ-VKWNLLYKAELH 1033
            D  L + N N   +T++  KWNLL+K   H
Sbjct: 68   DVTLWLSNVNSLTLTLKRKKWNLLFKTLTH 97


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,491
Number of Sequences: 317
Number of extensions: 11158
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 2
length of query: 1120
length of database: 114,650
effective HSP length: 64
effective length of query: 1056
effective length of database: 94,362
effective search space: 99646272
effective search space used: 99646272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)