Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000473-TA|BGIBMGA000473-PA|IPR004859|Putative 5-3
exonuclease
(1120 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 170 5e-42
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 169 1e-41
02_03_0236 + 16717320-16717496,16718082-16718240,16719410-167194... 112 2e-24
09_04_0427 - 17458974-17459129,17459227-17459335,17459753-174598... 34 0.56
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975... 33 0.97
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 31 5.2
04_01_0400 + 5257505-5257655,5258588-5258772 31 6.9
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 31 6.9
09_03_0056 - 11936264-11939677 30 9.1
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 30 9.1
03_05_0997 + 29565311-29565664,29566134-29566298,29566572-295666... 30 9.1
>03_06_0284 +
32836171-32836377,32836466-32836568,32836681-32836757,
32836846-32837037,32837144-32837263,32837350-32837412,
32837537-32837671,32837827-32837991,32838104-32838181,
32840303-32840389,32840548-32840619,32840925-32840951,
32842292-32842390,32843143-32843213,32843710-32843838,
32843936-32844012,32844186-32844226,32844319-32844393,
32844525-32844673,32844766-32844870,32844948-32845023,
32845465-32845541,32845761-32846529
Length = 997
Score = 170 bits (414), Expect = 5e-42
Identities = 114/302 (37%), Positives = 153/302 (50%), Gaps = 33/302 (10%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXXXXXXVLPTEKR----------FDSNC 50
MAIDGVAPRAKMNQQR RRFR+ E R DSN
Sbjct: 101 MAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLRKEFEAEGRTLVAKEKSEAIDSNV 160
Query: 51 ITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQP 110
ITPGT FM L L+Y+++ +++ P W VKV+LS PGEGEHKIM YIR R+ P
Sbjct: 161 ITPGTPFMFVLSSALQYYIQLRLNHTPGWQSVKVMLSDSNVPGEGEHKIMSYIRLQRNLP 220
Query: 111 DYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVKF-GRTTQRATTPEETNFXXXXXX 169
+DPNTRHCLYGLDADLIML + THE HF++LRE + G+ + + +
Sbjct: 221 GFDPNTRHCLYGLDADLIMLSLATHEVHFSILREVITMPGQHEKCFLCGQVGHLAAECRG 280
Query: 170 XXXXXXXQEFIAI-KDKLPF----------PYDIE------KIVDDWVLMGFLVGNDFIP 212
E I K K F D+E KI + V+ F+ F+
Sbjct: 281 SGQADKTVELPPIHKKKYQFLNIWVLREYLEKDLEIVDPPFKINFERVVDDFVFMCFFVG 340
Query: 213 N--LPNM---HVNNDALPLLYNTYMTVLPKLDGYINEAGDLNLERFEIFMQELSKIDKEQ 267
N LP+M + A+ LL N Y + GY+ + G++ L+R E F+Q ++ +++
Sbjct: 341 NDFLPHMPTLEIREGAINLLMNIYRREFTSMGGYLTDGGEVLLDRVEHFIQSVAVHEEQI 400
Query: 268 FQ 269
FQ
Sbjct: 401 FQ 402
Score = 160 bits (389), Expect = 5e-39
Identities = 71/149 (47%), Positives = 97/149 (65%)
Query: 370 KVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIKGFKDLKIDFELG 429
K D+V D + YV + W + YYY+G SW WFYP+HYAP+ SD+K +L+I F LG
Sbjct: 466 KPIDQVQRDVVQKYVEGLCWVMRYYYQGVCSWQWFYPYHYAPFASDLKCLAELEITFFLG 525
Query: 430 EPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTDLNGKINDWEAVVL 489
+PFKPF+QL+ LPAAS + LP + DLM D +SP+ +YP F+ D+NGK W+ +
Sbjct: 526 QPFKPFDQLMGTLPAASSNALPKYYGDLMNDPNSPLKSFYPKDFEIDMNGKRFAWQGIAK 585
Query: 490 IPFIDETNLLSAMAPCYQRLTDEEIKRNQ 518
+PFIDE LL+ + LTDEE RN+
Sbjct: 586 LPFIDERRLLAETQKLEETLTDEERFRNR 614
>01_06_1507 -
37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 169 bits (410), Expect = 1e-41
Identities = 70/145 (48%), Positives = 93/145 (64%)
Query: 373 DEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIKGFKDLKIDFELGEPF 432
+E+ D Y + W ++YYY+G SW WFYP+HYAP+ SD+ G L I FELG PF
Sbjct: 561 EEIRRDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLSGLGQLNITFELGSPF 620
Query: 433 KPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTDLNGKINDWEAVVLIPF 492
KPF+QL+ V PAAS H LP + LMTD +SPI+ +YP F+ D+NGK W+ + +PF
Sbjct: 621 KPFDQLMGVFPAASSHALPVQYRQLMTDANSPIIDFYPTDFEVDMNGKRYSWQGIAKLPF 680
Query: 493 IDETNLLSAMAPCYQRLTDEEIKRN 517
IDE LL+ + LT EE +RN
Sbjct: 681 IDEARLLAEIKKVEHTLTPEEARRN 705
Score = 164 bits (399), Expect = 3e-40
Identities = 85/156 (54%), Positives = 99/156 (63%), Gaps = 10/156 (6%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXXXXXXVLPTEKR----------FDSNC 50
MAIDGVAPRAKMNQQR RRFR+ E R DSN
Sbjct: 100 MAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEREGRKLPPKQQSQTCDSNV 159
Query: 51 ITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQP 110
ITPGT FMA L L+Y++ +++ DP W +VKVILS PGEGEHKIM YIR R+ P
Sbjct: 160 ITPGTEFMAVLSIALQYYIHLRLNYDPGWKQVKVILSDANVPGEGEHKIMSYIRGQRNLP 219
Query: 111 DYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEV 146
++PNTRHCLYGLDADLIML + THE HF++LRE V
Sbjct: 220 GFNPNTRHCLYGLDADLIMLALATHEVHFSILREVV 255
Score = 75.8 bits (178), Expect = 2e-13
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 187 PFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLDGYINEAG 246
PFP D E+IVDD++ M F VGNDF+P++P + + A+ LL Y P + GY+ +A
Sbjct: 323 PFPIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFPSMGGYLTDAC 382
Query: 247 DLNLERFEIFMQELSKIDKEQFQ 269
+L + E F+Q + + + FQ
Sbjct: 383 TPDLNKVEHFIQAVGSYEDKIFQ 405
>02_03_0236 +
16717320-16717496,16718082-16718240,16719410-16719472,
16720041-16720205,16721140-16721217,16721318-16721428,
16721516-16721632,16721713-16721808,16722592-16722662,
16722780-16723011
Length = 422
Score = 112 bits (269), Expect = 2e-24
Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 27/278 (9%)
Query: 177 QEFIAIKDKLPFPY---DIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMT 233
+E++ I+ K+ P DIE+++DD++ + FL+GNDFIP++P++ + AL LL Y T
Sbjct: 141 REYLEIELKILDPVCEPDIERLIDDFIFICFLMGNDFIPHIPSLEMKEYALDLLIEVYKT 200
Query: 234 VLPKLDGYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKTGRRPNANERRE 293
K+ GYI +N+E+ + + + ++ + + + L +EEK + E+
Sbjct: 201 TFNKMGGYI-----VNIEKVKD--KHAAYLEVSRLEIFFHQLSMYEEKIFLKRYELEQES 253
Query: 294 YKANNNETFNVDVNEIKGNHLDNDLQALINATDNMFMNXXXXXXXXXXXXXXXXANMEME 353
K + + + +E + L L+ + F N + E
Sbjct: 254 LKKSCRDVLR-EASESERLELSRKLE-------DRFFNEERPYDKLRLGLPGWKSRFYRE 305
Query: 354 FILHKKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYI 413
+ ++ S + D A+ Y+ + W L YY PSW W+YP + AP++
Sbjct: 306 YF---------GIETSNEIGNLQNDMAQKYLEGLCWMLQYYLADVPSWSWYYPFYVAPFV 356
Query: 414 SDIKGFKDLKIDFELGEPFKPFEQLLAVLPAASKHLLP 451
SD+K +I F + +P +PF+QL+AVLP L P
Sbjct: 357 SDLKSNCRFEISFTVDKPLRPFDQLMAVLPLRRHALSP 394
Score = 39.9 bits (89), Expect = 0.011
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 80 SKVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPNTRHCLYGLDADLIMLGMCTHEPHF 139
S VI G E + + YIR AR DP +H + DADLIML + +HE HF
Sbjct: 74 SDPNVITPGTEFMEKISQALTYYIR-ARLNSS-DPGWKHIM---DADLIMLALASHEVHF 128
Query: 140 ALLRE 144
++LRE
Sbjct: 129 SILRE 133
Score = 38.3 bits (85), Expect = 0.034
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 47 DSNCITPGTVFMARLHEQLKYFVKHKM-STDPLWSKV 82
D N ITPGT FM ++ + L Y+++ ++ S+DP W +
Sbjct: 75 DPNVITPGTEFMEKISQALTYYIRARLNSSDPGWKHI 111
>09_04_0427 -
17458974-17459129,17459227-17459335,17459753-17459862,
17459981-17460226,17460591-17460680,17461325-17461602,
17461814-17461942,17462007-17462418
Length = 509
Score = 34.3 bits (75), Expect = 0.56
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 361 YYMNKLDYSKVTDEVLADQAEGYVRAIQW-NLYYYYKGCPSWC--WFYPHHYAPYISDIK 417
Y MN DYS V D++ A+ + YV + W N + YKG + Y HY P I+ I
Sbjct: 197 YSMNSSDYSDVGDQITAE--DTYVFLLNWFNRFPEYKGRDFYIAGESYGGHYVPQIATIV 254
Query: 418 GF 419
F
Sbjct: 255 TF 256
>02_02_0491 -
10896463-10897172,10897246-10897353,10897457-10897558,
10897674-10897772,10898995-10899093,10900622-10900943
Length = 479
Score = 33.5 bits (73), Expect = 0.97
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 81 KVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPNT 116
+V + GH+TP +GE + D A+ +PD DP+T
Sbjct: 95 QVSFVGHGHDTPADGEGQFADAAYPAKWKPDQDPST 130
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 31.1 bits (67), Expect = 5.2
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 225 PLLYNTYMTVLPK---LDGYINEAGD----LNLERFEIFM--QELSKIDKEQFQDTYTDL 275
P L+N LPK +DG + + D L L+R + + K D+E+ Q+ L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLLKLDRSPLSQGTTKWKKSDRERDQNRDASL 1169
Query: 276 KYFEEKTGRRPNANERREYK 295
K K+GR + N R E K
Sbjct: 1170 KNSNSKSGRNSSGNARSERK 1189
>04_01_0400 + 5257505-5257655,5258588-5258772
Length = 111
Score = 30.7 bits (66), Expect = 6.9
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 500 SAMAPCYQRLTDEEIKRNQPGPMLVYSWSSTSLGVVDAPQYFPSIKECHAFEKRVWRNEL 559
SA+A + RN+ G ++++ +T V P + F K+ W+
Sbjct: 4 SALASSKPATAAMALARNRCGVLVLHEQQATGAAVASCPLRAANSGVVTRFAKQSWKAVK 63
Query: 560 DVPEEQLK 567
DVP+EQ K
Sbjct: 64 DVPKEQNK 71
>03_05_0642 -
26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 30.7 bits (66), Expect = 6.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 243 NEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKTGRRPNANERR 292
N+ D N FE+ ++E + D ++ + Y D +EK GRR + R
Sbjct: 183 NQDEDENDADFELEIEEALESDGDENAENYEDTNIMKEKDGRRRQTRKNR 232
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 30.3 bits (65), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 190 YDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDAL 224
+D E +VD WV +G +V N +P + H D L
Sbjct: 584 FDAETLVDSWVAVGLVVSNGSVPAVDIGHEYFDQL 618
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 30.3 bits (65), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 441 VLPAASKHLLPTP-FHDLMTDEDSPIVHYYPVHFD 474
+L S LL TP ++D + PI HY+PVH D
Sbjct: 369 ILACDSMTLLVTPRYYDFFSRSLMPIQHYWPVHND 403
>03_05_0997 + 29565311-29565664,29566134-29566298,29566572-29566661,
29566763-29566891,29568141-29568272,29568904-29568969,
29569326-29569505,29569664-29569693,29569744-29569839,
29569959-29570096,29571060-29571142,29571447-29571484,
29571568-29571788,29572491-29572538
Length = 589
Score = 30.3 bits (65), Expect = 9.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 963 LEKKYQDVLQWIKNQPFRRALRRDCGSEALEPEEMKALADNIDKQLEIL 1011
L + QDV + + + + A R+D +E L E++KA D + L++L
Sbjct: 455 LRYRAQDVARSVTTRDIKEARRQDIKNEILNSEKLKAHFDENPRDLDLL 503
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,150,218
Number of Sequences: 37544
Number of extensions: 1268241
Number of successful extensions: 2555
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2534
Number of HSP's gapped (non-prelim): 23
length of query: 1120
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1030
effective length of database: 11,414,388
effective search space: 11756819640
effective search space used: 11756819640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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