Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000473-TA|BGIBMGA000473-PA|IPR004859|Putative 5-3
exonuclease
(1120 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083) 289 1e-77
SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8) 113 1e-24
SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.32
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 35 0.32
SB_25519| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.3
SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.7
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13) 32 2.3
SB_41904| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 3.0
SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 5.2
SB_30958| Best HMM Match : rve (HMM E-Value=2.4e-15) 31 6.9
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.9
SB_3031| Best HMM Match : NblA (HMM E-Value=8.4) 30 9.1
SB_57078| Best HMM Match : Xlink (HMM E-Value=5.8) 30 9.1
SB_7443| Best HMM Match : Xlink (HMM E-Value=5.8) 30 9.1
>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
Length = 1466
Score = 289 bits (708), Expect = 1e-77
Identities = 137/290 (47%), Positives = 192/290 (66%), Gaps = 3/290 (1%)
Query: 371 VTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIKGFKDLKIDFELGE 430
++ +V++ YVR IQW L+YY+ G SW W+YP HYAP++SDIK F ++ F++ +
Sbjct: 274 LSSDVVSKITLEYVRGIQWILHYYFNGVQSWSWYYPFHYAPFLSDIKDFSHYELKFDMSK 333
Query: 431 PFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTDLNGKINDWEAVVLI 490
PF PFEQLL VLPAASK LLP PF +LM E SPI+ YYP++F TDLNGK +WEAVVLI
Sbjct: 334 PFLPFEQLLGVLPAASKQLLPAPFQNLMIMEQSPIIDYYPLNFKTDLNGKQQEWEAVVLI 393
Query: 491 PFIDETNLLSAMAPCYQRLTDEEIKRNQPGPMLVYSWSSTSLGVVDA--PQYFPSIKECH 548
PFIDE LL AM P Y++LT EE RN GP +Y++ T + P FP I CH
Sbjct: 394 PFIDEKRLLEAMKPLYRQLTKEEKTRNTHGPCHLYTYDKTLADHYPSTLPGVFPDISRCH 453
Query: 549 AFEKRVWRNELDVPEEQLKKGMLPNARRDMLFPGFPTMRHLKYKSSHKMAKVKVFDLPAR 608
A ++ R +L E L KG+L + + ++ FPGFPT+ H+ + + K A VKVF + +R
Sbjct: 454 ARCEKFDREQLVSSLENLVKGLLKDVKLEVYFPGFPTLYHIPHTAELKKASVKVFQMHSR 513
Query: 609 NSSVIIELIRDKDEDSLERVANELLGKVIWVGWPHLTRAKVISVSNEKTR 658
+ S+I++L + + E ++ RVA + LG+ +VGWPH+ A V++VS+ R
Sbjct: 514 SDSMILKLQQSQLEPTI-RVAEKYLGETCYVGWPHMVEALVVAVSDNTFR 562
Score = 149 bits (361), Expect = 1e-35
Identities = 79/209 (37%), Positives = 115/209 (55%), Gaps = 15/209 (7%)
Query: 184 DKLPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLDGYIN 243
D LPF YD+E+I+DDW+LMGFLVGNDFIP+LP MH+N+DALP+LY Y ++P LDGY++
Sbjct: 29 DSLPFEYDLERIIDDWILMGFLVGNDFIPHLPYMHINHDALPMLYQIYKEIMPSLDGYLH 88
Query: 244 EAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFE--------EKTGRRP---NANERR 292
+ G L L RFE +++ELSK D+E+F +++ D+K+FE EK G R N R+
Sbjct: 89 DGGTLCLPRFEKYLKELSKFDREKFNESFVDMKWFEAKVKHKFGEKKGARHSQLNPKVRQ 148
Query: 293 EYKANNNETFNVDVNEIKGNHLDNDLQALINATDNMFMNXXXXXXXXXXXXXXXXANMEM 352
+++N +D ++ D I+ + E+
Sbjct: 149 GNDSSDNPFSALDSLAVEFEEFKTDDDPEISPE----LAKLAAKMDDGDGDSEEVDEFEI 204
Query: 353 EFILHKKDYYMNKLDYSKVTDEVLADQAE 381
EF +HKK YY +K V + A E
Sbjct: 205 EFAMHKKSYYSDKFGLEHVDRQFSASSWE 233
Score = 56.0 bits (129), Expect = 2e-07
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 723 KYIVQDNCQMVYEPEWCEVPCGYAYQAVVRDVSAHVVQEVNRFSTLQEAYPPGDTVFLLT 782
+++ Q+ E EW VP YA+Q VV+D+S H + T+ E +P F+L
Sbjct: 593 RFLCSAKGQVTLEKEWSPVPKQYAFQTVVKDISVHESVSTDSMRTIDELFPVDCVCFMLA 652
Query: 783 PGQYYGCLATVVESAQVRSGRIKVSV 808
+YG TV+E V+ GR++V +
Sbjct: 653 M-PHYGASGTVLE-VDVKQGRVRVQL 676
Score = 53.2 bits (122), Expect = 1e-06
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 100 MDYIRWARSQPDYDPNTRHCLYGLDADL 127
M++IR R++PDYD NTRHCLYGLDADL
Sbjct: 1 MEFIRTERTRPDYDANTRHCLYGLDADL 28
Score = 50.0 bits (114), Expect = 1e-05
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 34/166 (20%)
Query: 928 QEVAGYTRRCAVTGAWQYSDRCVQLVKDYAQNFPEL----------EKKYQ--------- 968
+E+ GYTRR W ++ ++ Y FP+L ++ Y+
Sbjct: 691 RELLGYTRR--TQNGWMFTQAARNVITQYINKFPKLFDALATLQQSDQVYEADMLDHGID 748
Query: 969 -----DVLQWIKNQPFRRALRRDCGSEALEPEEMKALADNIDK-QLEILNANERKITMQV 1022
DV W+K+ P ++ CGS+AL+ ++A+ + + K ++ L A E +
Sbjct: 749 LSVLTDVQNWLKSLPLQKQTVVTCGSDALDDPVLEAIEEAVKKVKVSYLEAIEGAVRKVK 808
Query: 1023 KWNLLYKAELHAGEVSPDRAADYRLYDRVVCVARGLCVPAGARGTV 1068
+ L G PD + +L+DRVV V VP G RGTV
Sbjct: 809 PSDFL-------GNTLPDSDTEIQLFDRVVNVKLNSAVPFGLRGTV 847
>SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8)
Length = 367
Score = 113 bits (271), Expect = 1e-24
Identities = 65/166 (39%), Positives = 90/166 (54%), Gaps = 32/166 (19%)
Query: 358 KKDYYMNKLDYSKVT---DEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYIS 414
K YY NK S+ D+ + A+ YV + W L YYY+GCPSW W+YP+HYAP+ S
Sbjct: 135 KGRYYSNKFGVSESDEGFDDFRKNVADAYVEGLCWVLRYYYQGCPSWKWYYPYHYAPFAS 194
Query: 415 DIKGFKDLKIDFELGEPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFD 474
D F+DL G+ FE+ T +SPI+ +YPV F+
Sbjct: 195 D---FRDL------GQLKDEFER--------------------GTKPESPIIDFYPVDFE 225
Query: 475 TDLNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPG 520
DLNGK W+ V L+PF+DE LL+A+A Y ++++E KRN G
Sbjct: 226 IDLNGKKFAWQGVALLPFVDEKRLLNALAKVYPDISEDERKRNSLG 271
>SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 35.1 bits (77), Expect = 0.32
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 416 IKGFKDLKIDFELGEPFKPFEQLLAVLPAASK-HLLPTPFHDLMTDEDSPIVHYYPVHFD 474
+KG +DL+ D + + F LLA P SK HL + + +S ++ + P H D
Sbjct: 700 LKGHEDLRQDERVMQLFGLVNTLLASDPETSKRHLSIQRYAVIPLSTNSGLIGWVP-HCD 758
Query: 475 TDLNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLT 510
T L+ I D+ I E ++ MAP Y LT
Sbjct: 759 T-LHALIRDYREKKKILLNIEHRIMLTMAPDYDHLT 793
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 35.1 bits (77), Expect = 0.32
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 54 GTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSG 88
GT FM L L+Y++ +++TDP W +K I +G
Sbjct: 797 GTEFMDNLSISLRYYIADRLNTDPGWRNIKNIPAG 831
>SB_25519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 33.1 bits (72), Expect = 1.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 1035 GEVSPDRAADYRLYDRVVCVARGLCVPAGARGTV 1068
G PD + +L+DRVV V VP G RGTV
Sbjct: 6 GNTLPDSDTEIQLFDRVVNVKLNSAVPFGLRGTV 39
>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 32.7 bits (71), Expect = 1.7
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 929 EVAGYTRRCAVTGAWQYSDRCVQLVKDYAQNFPELEKKYQDVLQWIKNQPFRRALRRD-C 987
+ Y + AV A + +R + ++ Y Q++ +++ Q +L W + P + L R
Sbjct: 740 DAMNYAKMTAVVAAEK--ERHDKALEKYQQDYGRYQQRRQKILDWRERVPRKAELHRHRL 797
Query: 988 GSEALEPEEMKAL--ADNIDKQLEIL----NANERKI 1018
G++ L+P+ K + D + + +L NA ER++
Sbjct: 798 GAQTLQPDPAKTIPGVDAGPRAVRLLHPQQNAEERRV 834
>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
Length = 829
Score = 32.3 bits (70), Expect = 2.3
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 664 KQNNNVNGTSLYTTVQNSGNLHKQWLGERNTIIEHNMNRLGIELGDVNIIVHAVNLKGYK 723
KQ + G SL ++ S + ++ LGE +T +N +G L +N A LK Y+
Sbjct: 602 KQKEGIAGESLLE-LEYSLEIRRKQLGE-HTQTSRTLNLMGNALMALNKPEEA--LKRYQ 657
Query: 724 YIVQDNCQMVYEPEWCEVPCGYAYQAVVRDVSAHVVQE 761
+ +++ E CE+P Y A V + + QE
Sbjct: 658 EAMNMKTRLIGSEEHCEMPTFYNQMAAVHERLSEKTQE 695
>SB_41904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 31.9 bits (69), Expect = 3.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 969 DVLQWIKNQPFRRALRRDCGSEALEPEEMKALADNIDK----QLEILNANERKI 1018
DV W+K+ P ++ CGS+AL+ ++A+ + + K LE + RK+
Sbjct: 35 DVQNWLKSLPLQKQTVVTCGSDALDDPVLEAIEEAVKKVKVSYLEAIEGAVRKV 88
>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 31.1 bits (67), Expect = 5.2
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 545 KECHAFEKRVWRNELDVPEEQLKKGMLPNARRDMLFPGFPTMRH-----LKYKSSHKMAK 599
KE +K+ R + PE +++ + +R ++F F R LK S +
Sbjct: 530 KEAAKRKKQEQRQDDTKPENTVQEEVNKPKKRQIMFSVFGDYRKKMADDLKTYSGKERKS 589
Query: 600 VKVFDLP-ARNSSVIIELIRDKDE 622
VK + +P A SV+I++I++KD+
Sbjct: 590 VKAYAVPKAEQKSVVIKVIKNKDQ 613
>SB_30958| Best HMM Match : rve (HMM E-Value=2.4e-15)
Length = 470
Score = 30.7 bits (66), Expect = 6.9
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 947 DRCVQLVKDYAQNFPELEKKYQDVLQWIKNQPFRRALRRD-CGSEALEPEEMKAL--ADN 1003
+R + ++ Y Q++ +++ Q +L W + P + L R G++ L+P+ K + D
Sbjct: 40 ERHDKALEKYQQDYGRYQQRRQKILDWRERVPRKAELHRHRLGAQTLQPDPAKTIPGVDA 99
Query: 1004 IDKQLEIL----NANERKI 1018
+ + +L NA ER++
Sbjct: 100 GPRAVRLLHPQQNAEERRV 118
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 30.7 bits (66), Expect = 6.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 510 TDEEIKRNQPGPMLVYSWSSTSLGVVDAPQYFPSIKECHAFEKRVWRNE 558
TDE++ PG + Y+ SSTSL + P FP + + ++R E
Sbjct: 1177 TDEDVPSLAPGNLQAYNTSSTSLNITWNPIPFPYVHGILRGYRAMYREE 1225
>SB_3031| Best HMM Match : NblA (HMM E-Value=8.4)
Length = 256
Score = 30.3 bits (65), Expect = 9.1
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 563 EEQLKKGMLPNARRDMLF-PGFPTMRHLKYKSSHKMAKVKVFDLPARNSS--VIIELIRD 619
E L + + RD++ P T R L S + + V D P+R + ++ +L+RD
Sbjct: 75 ERDLMRDLSRKTERDLVRDPTRETGRDLVRDPSRETERDLVRD-PSRETGRDLVRDLLRD 133
Query: 620 KDEDSLERVANELLGKVIWV 639
D D L + +LL ++WV
Sbjct: 134 LDSDLLRDLTRDLLRDLLWV 153
>SB_57078| Best HMM Match : Xlink (HMM E-Value=5.8)
Length = 233
Score = 30.3 bits (65), Expect = 9.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 937 CAVTGAWQYSDRCVQLVKDYAQNFPELEKKYQDVLQWIKNQPFRRALRRDCGSEALEPEE 996
C V + Y R ++ + ++ PEL +V +WI N R + + L P
Sbjct: 98 CVVLKRFAYPCRLSDMISIFGRSVPELSMICNEVTEWIYNAHHHRT--TEWNNFILSPNS 155
Query: 997 MKALADNI 1004
++ AD I
Sbjct: 156 LQTYADAI 163
>SB_7443| Best HMM Match : Xlink (HMM E-Value=5.8)
Length = 233
Score = 30.3 bits (65), Expect = 9.1
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 937 CAVTGAWQYSDRCVQLVKDYAQNFPELEKKYQDVLQWIKNQPFRRALRRDCGSEALEPEE 996
C V + Y R ++ + ++ PEL +V +WI N R + + L P
Sbjct: 98 CVVLKRFAYPCRLSDMISIFGRSVPELSMICNEVTEWIYNAHHHRT--TEWNNFILSPNS 155
Query: 997 MKALADNI 1004
++ AD I
Sbjct: 156 LQTYADAI 163
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,652,037
Number of Sequences: 59808
Number of extensions: 1505185
Number of successful extensions: 3392
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3372
Number of HSP's gapped (non-prelim): 25
length of query: 1120
length of database: 16,821,457
effective HSP length: 90
effective length of query: 1030
effective length of database: 11,438,737
effective search space: 11781899110
effective search space used: 11781899110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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