Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000473-TA|BGIBMGA000473-PA|IPR004859|Putative 5-3
exonuclease
(1120 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY137776-1|AAN11306.1| 1706|Homo sapiens DNA strand-exchange pro... 731 0.0
BX640905-1|CAE45950.1| 1706|Homo sapiens hypothetical protein pr... 730 0.0
AK096177-1|BAC04718.1| 473|Homo sapiens protein ( Homo sapiens ... 431 e-120
BC039314-1|AAH39314.1| 459|Homo sapiens XRN1 protein protein. 398 e-110
BC048104-1|AAH48104.1| 459|Homo sapiens XRN1 protein protein. 397 e-109
AL133623-1|CAB63749.1| 1159|Homo sapiens hypothetical protein pr... 207 2e-52
AY382900-1|AAR24369.1| 907|Homo sapiens 5'-3' exoribonuclease 2... 175 7e-43
AL158013-2|CAH71495.1| 950|Homo sapiens 5'-3' exoribonuclease 2... 175 7e-43
AL117332-2|CAI19756.1| 950|Homo sapiens 5'-3' exoribonuclease 2... 175 7e-43
AF064257-1|AAD55138.1| 950|Homo sapiens Dhm1-like protein protein. 173 2e-42
BC006417-1|AAH06417.2| 580|Homo sapiens XRN2 protein protein. 171 2e-41
AK000084-1|BAA90934.1| 560|Homo sapiens protein ( Homo sapiens ... 171 2e-41
AF152169-1|AAQ13577.1| 950|Homo sapiens DHP protein protein. 169 4e-41
>AY137776-1|AAN11306.1| 1706|Homo sapiens DNA strand-exchange
protein SEP1 protein.
Length = 1706
Score = 731 bits (1806), Expect = 0.0
Identities = 383/825 (46%), Positives = 508/825 (61%), Gaps = 39/825 (4%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXXXXXXVLPTEKRFDSNCITPGTVFMAR 60
MA+DGVAPRAKMNQQRGRRFRS LPTE RFDSNCITPGT FMAR
Sbjct: 83 MAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMAR 142
Query: 61 LHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPNTRHCL 120
LHE LKYFV K+STD W V + SGHETPGEGEHKIM++IR +++PD+DPNTRHCL
Sbjct: 143 LHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCL 202
Query: 121 YGLDADLIMLGMCTHEPHFALLREEVKF-GRTTQRATTPEETNFXXXXXXXXXXXXXQEF 179
YGLDADLIMLG+ +HE HF+LLREEV+F G+ TQR PEET F EF
Sbjct: 203 YGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEF 262
Query: 180 IAIKDKLPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLD 239
+K+K+ F YDIE+I+DDW+LMGFLVGNDFIP+LP++H+N+DALPLLY TY+T+LP+L
Sbjct: 263 SVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELG 322
Query: 240 GYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKTGRR-------PNANERR 292
GYINE+G LNL RFE ++ +LS D+E F + + DLK+FE K G + A E R
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEAR 382
Query: 293 EYKANNNETFNVDVNEIKGNHLDNDLQALINATDNMFMNXXXXXXXXXXXXXXXXANMEM 352
YK + N + LD + +I + DN+ E
Sbjct: 383 NYK--EKKKLKGQENSLCWTALDKNEGEMITSKDNL------------EDETEDDDLFET 428
Query: 353 EFILHKKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPY 412
EF +K+ YYM K+ V+D+ LADQA YV+AIQW L+YYY G SW W+YP+HYAP+
Sbjct: 429 EFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPF 488
Query: 413 ISDIKGFKDLKIDFELGEPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVH 472
+SDI LKI FELG+PFKPFEQLLAVLPAASK+LLP + LMT+EDSPI+ YYP
Sbjct: 489 LSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPD 548
Query: 473 FDTDLNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPGPMLV--YSWSST 530
F TDLNGK +WEAVVLIPFIDE LL AM C L EE KRNQ L+ Y +
Sbjct: 549 FKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTE 608
Query: 531 SLGVVDAPQYFPSIKECHAFEKRVWRNELDVPEEQLKKGMLPNA-RRDMLFPGFPTMRHL 589
+ P+ FP+I+ C K + LD + K + ++ + F GFPT++H+
Sbjct: 609 FIYPSPWPEKFPAIERCCTRYKII---SLDAWRVDINKNKITRIDQKALYFCGFPTLKHI 665
Query: 590 KYKSSHKMAKVKVFDLPARNSSVIIELIRDKDEDSL--ERVANELLGKVIWVGWPHLTRA 647
++K K + V+VF +R ++++E++ D + D L E VA+ +LGK ++V WPHL A
Sbjct: 666 RHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWPHLEEA 725
Query: 648 KVISVSNEKTRLHYVD---KQNNNVNGTSLYTTVQNSGNLHK-QWLGERNTIIEHNMNRL 703
+V++VS+ +T+ + + Q T+ + V + G+ + W E I EH + R
Sbjct: 726 RVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEHYLRRK 785
Query: 704 GIELGDVNIIVHAVNLKGYKYIVQDNCQMVYEPEWCEVPCGYAYQAVVRDVSAHVVQEVN 763
GI + + + +V+A L G KY + N ++ E +W + + YQ +V+D+ A +
Sbjct: 786 GIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRA-FDSRFS 844
Query: 764 RFSTLQEAYPPGDTVFLL-TPGQYYGCLATVVESAQV-RSGRIKV 806
TL + +P VF+L TP YYGC V +S V GRI+V
Sbjct: 845 NIKTLDDLFPLRSMVFMLGTP--YYGCTGEVQDSGDVITEGRIRV 887
Score = 79.0 bits (186), Expect = 9e-14
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 43/259 (16%)
Query: 884 GVTNQMLSCITGCVFVVEGTRDGRSTDXXXXXXXXXXXXXXXXXQEVAGYTRRCAVTGAW 943
GV+ ++S TG +F+ G+R R+ +EV GYT++ V W
Sbjct: 922 GVSGYLVSRFTGSIFIGRGSR--RNPHGDHKANVGLNLKFNKKNEEVPGYTKK--VGSEW 977
Query: 944 QYSDRCVQLVKDYAQNFPEL--------------------------EKKYQDVLQWIKNQ 977
YS QL+ +Y + PEL +K Q+++ W+K
Sbjct: 978 MYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGH 1037
Query: 978 PFRRALRRDCGSEALEPEEMKALADNIDKQLEILNANERKITMQVKWNLLYKAELHAGEV 1037
P R C + L+ ++ + + ++K + N +K+ + VK +LLY+ V
Sbjct: 1038 PVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQ--RKNNKKVRVTVKPHLLYRPLEQQHGV 1095
Query: 1038 SPDRAADYRLYDRVVCVARGLCVPAGARGTVXXXXXXXXXTSVRLSDRLNAAHTYLVIFD 1097
PDR A++ L+DRVV V VP G RGT+ ++ ++R A + V+FD
Sbjct: 1096 IPDRDAEFCLFDRVVNVRENFSVPVGLRGTI---------IGIKGANR-EADVLFEVLFD 1145
Query: 1098 RPFAGALHDDCFEENRLYR 1116
F G L C R YR
Sbjct: 1146 EEFPGGLTIRC-SPGRGYR 1163
>BX640905-1|CAE45950.1| 1706|Homo sapiens hypothetical protein
protein.
Length = 1706
Score = 730 bits (1804), Expect = 0.0
Identities = 382/825 (46%), Positives = 508/825 (61%), Gaps = 39/825 (4%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXXXXXXVLPTEKRFDSNCITPGTVFMAR 60
MA+DGVAPRAKMNQQRGRRFRS LPTE RFDSNCITPGT FMAR
Sbjct: 83 MAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMAR 142
Query: 61 LHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPNTRHCL 120
LHE LKYFV K+STD W V + SGHETPGEGEHKIM++IR +++PD+DPNTRHCL
Sbjct: 143 LHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCL 202
Query: 121 YGLDADLIMLGMCTHEPHFALLREEVKF-GRTTQRATTPEETNFXXXXXXXXXXXXXQEF 179
YGLDADLIMLG+ +HE HF+LLREEV+F G+ TQR PEET F EF
Sbjct: 203 YGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEF 262
Query: 180 IAIKDKLPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLD 239
+K+K+ F YDIE+I+DDW+LMGFLVGNDFIP+LP++H+N+DALPLLY TY+T+LP+L
Sbjct: 263 SVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELG 322
Query: 240 GYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKTGRR-------PNANERR 292
GYINE+G LNL RFE ++ +LS D+E F + + DLK+FE K G + A E R
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEAR 382
Query: 293 EYKANNNETFNVDVNEIKGNHLDNDLQALINATDNMFMNXXXXXXXXXXXXXXXXANMEM 352
YK + N + LD + +I + DN+ E
Sbjct: 383 NYK--EKKKLKGQENSLCWTALDKNEGEMITSKDNL------------EDETEDDDLFET 428
Query: 353 EFILHKKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPY 412
EF +K+ YYM K+ V+D+ LADQA YV+AIQW L+YYY G SW W+YP+HYAP+
Sbjct: 429 EFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPF 488
Query: 413 ISDIKGFKDLKIDFELGEPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVH 472
+SDI LKI FELG+PFKPFEQLLAVLPAASK+LLP + LMT+EDSPI+ YYP
Sbjct: 489 LSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPD 548
Query: 473 FDTDLNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPGPMLV--YSWSST 530
F TDLNGK +WEAVVLIPFIDE LL AM C L EE KRNQ L+ Y +
Sbjct: 549 FKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTE 608
Query: 531 SLGVVDAPQYFPSIKECHAFEKRVWRNELDVPEEQLKKGMLPNA-RRDMLFPGFPTMRHL 589
+ P+ FP+I+ C K + LD + K + ++ + F GFPT++H+
Sbjct: 609 FIYPSPWPEKFPAIERCCTRYKII---SLDAWRVDINKNKITRIDQKALYFCGFPTLKHI 665
Query: 590 KYKSSHKMAKVKVFDLPARNSSVIIELIRDKDEDSL--ERVANELLGKVIWVGWPHLTRA 647
++K K + V+VF +R ++++E++ D + D L E VA+ +LGK ++V WPH+ A
Sbjct: 666 RHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWPHIEEA 725
Query: 648 KVISVSNEKTRLHYVD---KQNNNVNGTSLYTTVQNSGNLHK-QWLGERNTIIEHNMNRL 703
+V++VS+ +T+ + + Q T+ + V + G+ + W E I EH + R
Sbjct: 726 RVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEHYLRRK 785
Query: 704 GIELGDVNIIVHAVNLKGYKYIVQDNCQMVYEPEWCEVPCGYAYQAVVRDVSAHVVQEVN 763
GI + + + +V+A L G KY + N ++ E +W + + YQ +V+D+ A +
Sbjct: 786 GIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRA-FDSRFS 844
Query: 764 RFSTLQEAYPPGDTVFLL-TPGQYYGCLATVVESAQV-RSGRIKV 806
TL + +P VF+L TP YYGC V +S V GRI+V
Sbjct: 845 NIKTLDDLFPLRSMVFMLGTP--YYGCTGEVQDSGDVITEGRIRV 887
Score = 79.0 bits (186), Expect = 9e-14
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 43/259 (16%)
Query: 884 GVTNQMLSCITGCVFVVEGTRDGRSTDXXXXXXXXXXXXXXXXXQEVAGYTRRCAVTGAW 943
GV+ ++S TG +F+ G+R R+ +EV GYT++ V W
Sbjct: 922 GVSGYLVSRFTGSIFIGRGSR--RNPHGDHKANVGLNLKFNKKNEEVPGYTKK--VGSEW 977
Query: 944 QYSDRCVQLVKDYAQNFPEL--------------------------EKKYQDVLQWIKNQ 977
YS QL+ +Y + PEL +K Q+++ W+K
Sbjct: 978 MYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGH 1037
Query: 978 PFRRALRRDCGSEALEPEEMKALADNIDKQLEILNANERKITMQVKWNLLYKAELHAGEV 1037
P R C + L+ ++ + + ++K + N +K+ + VK +LLY+ V
Sbjct: 1038 PVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQ--RKNNKKVRVTVKPHLLYRPLEQQHGV 1095
Query: 1038 SPDRAADYRLYDRVVCVARGLCVPAGARGTVXXXXXXXXXTSVRLSDRLNAAHTYLVIFD 1097
PDR A++ L+DRVV V VP G RGT+ ++ ++R A + V+FD
Sbjct: 1096 IPDRDAEFCLFDRVVNVRENFSVPVGLRGTI---------IGIKGANR-EADVLFEVLFD 1145
Query: 1098 RPFAGALHDDCFEENRLYR 1116
F G L C R YR
Sbjct: 1146 EEFPGGLTIRC-SPGRGYR 1163
>AK096177-1|BAC04718.1| 473|Homo sapiens protein ( Homo sapiens
cDNA FLJ38858 fis, clone MESAN2011627, highly similar to
5'-3' exoribonuclease 1. ).
Length = 473
Score = 431 bits (1063), Expect = e-120
Identities = 214/405 (52%), Positives = 264/405 (65%), Gaps = 22/405 (5%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXXXXXXVLPTEKRFDSNCITPGTVFMAR 60
MA+DGVAPRAKMNQQRGRRFRS LPTE RFDSNCITPGT FMAR
Sbjct: 83 MAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMAR 142
Query: 61 LHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPNTRHCL 120
LHE LKYFV K+STD W V + SGHETPGEGEHKIM++IR +++PD+DPNTRHCL
Sbjct: 143 LHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCL 202
Query: 121 YGLDADLIMLGMCTHEPHFALLREEVKF-GRTTQRATTPEETNFXXXXXXXXXXXXXQEF 179
YGLDADLIMLG+ +HE HF+LLREEV+F G+ TQR PEET F EF
Sbjct: 203 YGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEF 262
Query: 180 IAIKDKLPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLD 239
+K+K+ F YDIE+I+DDW+LMGFLVGNDFIP+LP++H+N+DALPLLY TY+T+LP+L
Sbjct: 263 SVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELG 322
Query: 240 GYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKTGRR-------PNANERR 292
GYINE+G LNL RFE ++ +LS D+E F + + DLK+FE K G + A E R
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEAR 382
Query: 293 EYKANNNETFNVDVNEIKGNHLDNDLQALINATDNMFMNXXXXXXXXXXXXXXXXANMEM 352
YK + N + LD + +I + DN+ E
Sbjct: 383 NYK--EKKKLKGQENSLCWTALDKNEGEMITSKDNL------------EDETEDDDLFET 428
Query: 353 EFILHKKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKG 397
EF +K+ YYM K+ V+D+ LADQA YV+AIQW L+YYY G
Sbjct: 429 EFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHG 473
>BC039314-1|AAH39314.1| 459|Homo sapiens XRN1 protein protein.
Length = 459
Score = 398 bits (981), Expect = e-110
Identities = 199/386 (51%), Positives = 248/386 (64%), Gaps = 22/386 (5%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXXXXXXVLPTEKRFDSNCITPGTVFMAR 60
MA+DGVAPRAKMNQQRGRRFRS LPTE RFDSNCITPGT FMAR
Sbjct: 83 MAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMAR 142
Query: 61 LHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPNTRHCL 120
LHE LKYFV K+STD W V + SGHETPGEGEHKIM++IR +++PD+DPNTRHCL
Sbjct: 143 LHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCL 202
Query: 121 YGLDADLIMLGMCTHEPHFALLREEVKF-GRTTQRATTPEETNFXXXXXXXXXXXXXQEF 179
YGLDADLIMLG+ +HE HF+LLREEV+F G+ TQR PEET F EF
Sbjct: 203 YGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEF 262
Query: 180 IAIKDKLPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLD 239
+K+K+ F YDIE+I+DDW+LMGFLVGNDFIP+LP++H+N+DALPLLY TY+T+LP+L
Sbjct: 263 SVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELG 322
Query: 240 GYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKTGRR-------PNANERR 292
GYINE+G LNL RFE ++ +LS D+E F + + DLK+FE K G + A E R
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEAR 382
Query: 293 EYKANNNETFNVDVNEIKGNHLDNDLQALINATDNMFMNXXXXXXXXXXXXXXXXANMEM 352
YK + N + LD + +I + DN+ E
Sbjct: 383 NYK--EKKKLKGQENSLCWTALDKNEGEMITSKDNL------------EDETEDDDLFET 428
Query: 353 EFILHKKDYYMNKLDYSKVTDEVLAD 378
EF +K+ YYM K+ V++ V A+
Sbjct: 429 EFRQYKRTYYMTKMGVDVVSEYVFAN 454
>BC048104-1|AAH48104.1| 459|Homo sapiens XRN1 protein protein.
Length = 459
Score = 397 bits (978), Expect = e-109
Identities = 198/386 (51%), Positives = 248/386 (64%), Gaps = 22/386 (5%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXXXXXXVLPTEKRFDSNCITPGTVFMAR 60
MA+DGVAPRAKMNQQRGRRFRS LPTE RFDSNCITPGT FMA+
Sbjct: 83 MAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMAK 142
Query: 61 LHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPNTRHCL 120
LHE LKYFV K+STD W V + SGHETPGEGEHKIM++IR +++PD+DPNTRHCL
Sbjct: 143 LHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCL 202
Query: 121 YGLDADLIMLGMCTHEPHFALLREEVKF-GRTTQRATTPEETNFXXXXXXXXXXXXXQEF 179
YGLDADLIMLG+ +HE HF+LLREEV+F G+ TQR PEET F EF
Sbjct: 203 YGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEF 262
Query: 180 IAIKDKLPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLD 239
+K+K+ F YDIE+I+DDW+LMGFLVGNDFIP+LP++H+N+DALPLLY TY+T+LP+L
Sbjct: 263 SVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELG 322
Query: 240 GYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKTGRR-------PNANERR 292
GYINE+G LNL RFE ++ +LS D+E F + + DLK+FE K G + A E R
Sbjct: 323 GYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEAR 382
Query: 293 EYKANNNETFNVDVNEIKGNHLDNDLQALINATDNMFMNXXXXXXXXXXXXXXXXANMEM 352
YK + N + LD + +I + DN+ E
Sbjct: 383 NYK--EKKKLKGQENSLCWTALDKNEGEMITSKDNL------------EDETEDDDLFET 428
Query: 353 EFILHKKDYYMNKLDYSKVTDEVLAD 378
EF +K+ YYM K+ V++ V A+
Sbjct: 429 EFRQYKRTYYMTKMGVDVVSEYVFAN 454
>AL133623-1|CAB63749.1| 1159|Homo sapiens hypothetical protein
protein.
Length = 1159
Score = 207 bits (505), Expect = 2e-52
Identities = 128/359 (35%), Positives = 196/359 (54%), Gaps = 18/359 (5%)
Query: 459 TDEDSPIVHYYPVHFDTDLNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQ 518
T+EDSPI+ YYP F TDLNGK +WEAVVLIPFIDE LL AM C L EE KRNQ
Sbjct: 1 TNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDE-RLLEAMETCNHSLKKEERKRNQ 59
Query: 519 PGPMLV--YSWSSTSLGVVDAPQYFPSIKECHAFEKRVWRNELDVPEEQLKKGMLPNA-R 575
L+ Y + + P+ FP+I+ C K + LD + K + +
Sbjct: 60 HSECLMCWYDRDTEFIYPSPWPEKFPAIERCCTRYKII---SLDAWRVDINKNKITRIDQ 116
Query: 576 RDMLFPGFPTMRHLKYKSSHKMAKVKVFDLPARNSSVIIELIRDKDEDSL--ERVANELL 633
+ + F GFPT++H+++K K + V+VF +R ++++E++ D + D L E VA+ +L
Sbjct: 117 KALYFCGFPTLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVL 176
Query: 634 GKVIWVGWPHLTRAKVISVSNEKTRLHYVD---KQNNNVNGTSLYTTVQNSGNLHK-QWL 689
GK ++V WPHL A+V++VS+ +T+ + + Q T+ + V + G+ + W
Sbjct: 177 GKSVFVNWPHLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWA 236
Query: 690 GERNTIIEHNMNRLGIELGDVNIIVHAVNLKGYKYIVQDNCQMVYEPEWCEVPCGYAYQA 749
E I EH + R GI + + + +V+A L G KY + N ++ E +W + + YQ
Sbjct: 237 KEVQGISEHYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQT 296
Query: 750 VVRDVSAHVVQEVNRFSTLQEAYPPGDTVFLL-TPGQYYGCLATVVESAQV-RSGRIKV 806
+V+D+ A + TL + +P VF+L TP YYGC V +S V GRI+V
Sbjct: 297 IVKDIRA-FDSRFSNIKTLDDLFPLRSMVFMLGTP--YYGCTGEVQDSGDVITEGRIRV 352
Score = 79.0 bits (186), Expect = 9e-14
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 43/259 (16%)
Query: 884 GVTNQMLSCITGCVFVVEGTRDGRSTDXXXXXXXXXXXXXXXXXQEVAGYTRRCAVTGAW 943
GV+ ++S TG +F+ G+R R+ +EV GYT++ V W
Sbjct: 387 GVSGYLVSRFTGSIFIGRGSR--RNPHGDHKANVGLNLKFNKKNEEVPGYTKK--VGSEW 442
Query: 944 QYSDRCVQLVKDYAQNFPEL--------------------------EKKYQDVLQWIKNQ 977
YS QL+ +Y + PEL +K Q+++ W+K
Sbjct: 443 MYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGH 502
Query: 978 PFRRALRRDCGSEALEPEEMKALADNIDKQLEILNANERKITMQVKWNLLYKAELHAGEV 1037
P R C + L+ ++ + + ++K + N +K+ + VK +LLY+ V
Sbjct: 503 PVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQ--RKNNKKVRVTVKPHLLYRPLEQQHGV 560
Query: 1038 SPDRAADYRLYDRVVCVARGLCVPAGARGTVXXXXXXXXXTSVRLSDRLNAAHTYLVIFD 1097
PDR A++ L+DRVV V VP G RGT+ ++ ++R A + V+FD
Sbjct: 561 IPDRDAEFCLFDRVVNVRENFSVPVGLRGTI---------IGIKGANR-EADVLFEVLFD 610
Query: 1098 RPFAGALHDDCFEENRLYR 1116
F G L C R YR
Sbjct: 611 EEFPGGLTIRC-SPGRGYR 628
>AY382900-1|AAR24369.1| 907|Homo sapiens 5'-3' exoribonuclease 2
isoform 3 protein.
Length = 907
Score = 175 bits (426), Expect = 7e-43
Identities = 87/157 (55%), Positives = 104/157 (66%), Gaps = 10/157 (6%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXX-------XXXXVLPTEK---RFDSNC 50
MAIDGVAPRAKMNQQR RRFR+ LP E+ RFDSNC
Sbjct: 57 MAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNC 116
Query: 51 ITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQP 110
ITPGT FM L + L+Y++ +++ DP W + VILS PGEGEHKIMDYIR R+QP
Sbjct: 117 ITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQP 176
Query: 111 DYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVK 147
++DPNT HCL G DADLIMLG+ THEP+F ++REE K
Sbjct: 177 NHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFK 213
Score = 171 bits (415), Expect = 2e-41
Identities = 77/164 (46%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 358 KKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIK 417
K+ YY NK D ++ + YV + W L YYY+GC SW W+YP HYAP+ SD +
Sbjct: 474 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 533
Query: 418 GFKDLKIDFELG-EPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTD 476
G D+ DFE G +PFKP EQL+ V PAAS + LP + LM+D DS I+ +YP F D
Sbjct: 534 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 593
Query: 477 LNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPG 520
LNGK W+ V L+PF+DE L +A+ Y LT EE +RN G
Sbjct: 594 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 637
Score = 88.2 bits (209), Expect = 1e-16
Identities = 36/96 (37%), Positives = 60/96 (62%)
Query: 186 LPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLDGYINEA 245
LPF +D+E+ +DDWV M F VGNDF+P+LP++ + +A+ L N Y V+ K GY+ E+
Sbjct: 279 LPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTES 338
Query: 246 GDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEK 281
G +NL+R ++ M + +++ F+ D F +
Sbjct: 339 GYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRR 374
>AL158013-2|CAH71495.1| 950|Homo sapiens 5'-3' exoribonuclease 2
protein.
Length = 950
Score = 175 bits (426), Expect = 7e-43
Identities = 87/157 (55%), Positives = 104/157 (66%), Gaps = 10/157 (6%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXX-------XXXXVLPTEK---RFDSNC 50
MAIDGVAPRAKMNQQR RRFR+ LP E+ RFDSNC
Sbjct: 100 MAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNC 159
Query: 51 ITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQP 110
ITPGT FM L + L+Y++ +++ DP W + VILS PGEGEHKIMDYIR R+QP
Sbjct: 160 ITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQP 219
Query: 111 DYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVK 147
++DPNT HCL G DADLIMLG+ THEP+F ++REE K
Sbjct: 220 NHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFK 256
Score = 171 bits (415), Expect = 2e-41
Identities = 77/164 (46%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 358 KKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIK 417
K+ YY NK D ++ + YV + W L YYY+GC SW W+YP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 418 GFKDLKIDFELG-EPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTD 476
G D+ DFE G +PFKP EQL+ V PAAS + LP + LM+D DS I+ +YP F D
Sbjct: 577 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 477 LNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPG 520
LNGK W+ V L+PF+DE L +A+ Y LT EE +RN G
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 680
Score = 88.2 bits (209), Expect = 1e-16
Identities = 36/96 (37%), Positives = 60/96 (62%)
Query: 186 LPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLDGYINEA 245
LPF +D+E+ +DDWV M F VGNDF+P+LP++ + +A+ L N Y V+ K GY+ E+
Sbjct: 322 LPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTES 381
Query: 246 GDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEK 281
G +NL+R ++ M + +++ F+ D F +
Sbjct: 382 GYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRR 417
>AL117332-2|CAI19756.1| 950|Homo sapiens 5'-3' exoribonuclease 2
protein.
Length = 950
Score = 175 bits (426), Expect = 7e-43
Identities = 87/157 (55%), Positives = 104/157 (66%), Gaps = 10/157 (6%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXX-------XXXXVLPTEK---RFDSNC 50
MAIDGVAPRAKMNQQR RRFR+ LP E+ RFDSNC
Sbjct: 100 MAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNC 159
Query: 51 ITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQP 110
ITPGT FM L + L+Y++ +++ DP W + VILS PGEGEHKIMDYIR R+QP
Sbjct: 160 ITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQP 219
Query: 111 DYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVK 147
++DPNT HCL G DADLIMLG+ THEP+F ++REE K
Sbjct: 220 NHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFK 256
Score = 171 bits (415), Expect = 2e-41
Identities = 77/164 (46%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 358 KKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIK 417
K+ YY NK D ++ + YV + W L YYY+GC SW W+YP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 418 GFKDLKIDFELG-EPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTD 476
G D+ DFE G +PFKP EQL+ V PAAS + LP + LM+D DS I+ +YP F D
Sbjct: 577 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 477 LNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPG 520
LNGK W+ V L+PF+DE L +A+ Y LT EE +RN G
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 680
Score = 88.2 bits (209), Expect = 1e-16
Identities = 36/96 (37%), Positives = 60/96 (62%)
Query: 186 LPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLDGYINEA 245
LPF +D+E+ +DDWV M F VGNDF+P+LP++ + +A+ L N Y V+ K GY+ E+
Sbjct: 322 LPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTES 381
Query: 246 GDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEK 281
G +NL+R ++ M + +++ F+ D F +
Sbjct: 382 GYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRR 417
>AF064257-1|AAD55138.1| 950|Homo sapiens Dhm1-like protein protein.
Length = 950
Score = 173 bits (422), Expect = 2e-42
Identities = 87/160 (54%), Positives = 104/160 (65%), Gaps = 10/160 (6%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXX-------XXXXVLPTEK---RFDSNC 50
MAIDGVAPR KMNQQR RRFR+ LP E+ RFDSNC
Sbjct: 100 MAIDGVAPRVKMNQQRSRRFRAIKRGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNC 159
Query: 51 ITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQP 110
ITPGT FM L + L+Y++ +++ DP W + VILS PGEGEHKIMDYIR R+QP
Sbjct: 160 ITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQP 219
Query: 111 DYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVKFGR 150
++DPNT HCL G DADLIMLG+ THEP+F ++REE K R
Sbjct: 220 NHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFKPNR 259
Score = 169 bits (411), Expect = 5e-41
Identities = 76/164 (46%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 358 KKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIK 417
K+ YY NK D ++ + YV + W L YYY+GC SW W+YP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 418 GFKDLKIDFELG-EPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTD 476
G D+ +FE G +PFKP EQL+ V PAAS + LP + LM+D DS I+ +YP F D
Sbjct: 577 GIADMPSEFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 477 LNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPG 520
LNGK W+ V L+PF+DE L +A+ Y LT EE +RN G
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 680
Score = 88.2 bits (209), Expect = 1e-16
Identities = 36/96 (37%), Positives = 60/96 (62%)
Query: 186 LPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLDGYINEA 245
LPF +D+E+ +DDWV M F VGNDF+P+LP++ + +A+ L N Y V+ K GY+ E+
Sbjct: 322 LPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTES 381
Query: 246 GDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEK 281
G +NL+R ++ M + +++ F+ D F +
Sbjct: 382 GYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRR 417
>BC006417-1|AAH06417.2| 580|Homo sapiens XRN2 protein protein.
Length = 580
Score = 171 bits (415), Expect = 2e-41
Identities = 77/164 (46%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 358 KKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIK 417
K+ YY NK D ++ + YV + W L YYY+GC SW W+YP HYAP+ SD +
Sbjct: 147 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 206
Query: 418 GFKDLKIDFELG-EPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTD 476
G D+ DFE G +PFKP EQL+ V PAAS + LP + LM+D DS I+ +YP F D
Sbjct: 207 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 266
Query: 477 LNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPG 520
LNGK W+ V L+PF+DE L +A+ Y LT EE +RN G
Sbjct: 267 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 310
>AK000084-1|BAA90934.1| 560|Homo sapiens protein ( Homo sapiens
cDNA FLJ20077 fis, clone COL02904. ).
Length = 560
Score = 171 bits (415), Expect = 2e-41
Identities = 77/164 (46%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 358 KKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIK 417
K+ YY NK D ++ + YV + W L YYY+GC SW W+YP HYAP+ SD +
Sbjct: 127 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 186
Query: 418 GFKDLKIDFELG-EPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTD 476
G D+ DFE G +PFKP EQL+ V PAAS + LP + LM+D DS I+ +YP F D
Sbjct: 187 GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 246
Query: 477 LNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPG 520
LNGK W+ V L+PF+DE L +A+ Y LT EE +RN G
Sbjct: 247 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 290
>AF152169-1|AAQ13577.1| 950|Homo sapiens DHP protein protein.
Length = 950
Score = 169 bits (412), Expect = 4e-41
Identities = 76/164 (46%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 358 KKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIK 417
K+ YY NK D ++ + YV + W L YYY+GC SW W+YP HYAP+ SD +
Sbjct: 517 KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE 576
Query: 418 GFKDLKIDFELG-EPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTD 476
G D+ +FE G +PFKP EQL+ V PAAS + LP + LM+D DS I+ +YP F D
Sbjct: 577 GIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID 636
Query: 477 LNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPG 520
LNGK W+ V L+PF+DE L +A+ Y LT EE +RN G
Sbjct: 637 LNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLG 680
Score = 161 bits (390), Expect = 2e-38
Identities = 83/160 (51%), Positives = 99/160 (61%), Gaps = 10/160 (6%)
Query: 1 MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXX-------XXXXVLPTEK---RFDSNC 50
MAIDGVAPR KMNQQR RRFR+ LP E+ RFDSNC
Sbjct: 100 MAIDGVAPRVKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNC 159
Query: 51 ITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQP 110
ITPGT FM L + L+Y++ +++ DP W + VILS PGEGEHKIMDYIR R+QP
Sbjct: 160 ITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQP 219
Query: 111 DYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVKFGR 150
++DPNT HCL G DADLIML P+F ++REE K R
Sbjct: 220 NHDPNTHHCLCGADADLIMLAFPHMNPNFTIIREEFKPNR 259
Score = 88.2 bits (209), Expect = 1e-16
Identities = 36/96 (37%), Positives = 60/96 (62%)
Query: 186 LPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLDGYINEA 245
LPF +D+E+ +DDWV M F VGNDF+P+LP++ + +A+ L N Y V+ K GY+ E+
Sbjct: 322 LPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTES 381
Query: 246 GDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEK 281
G +NL+R ++ M + +++ F+ D F +
Sbjct: 382 GYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRR 417
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,396,771
Number of Sequences: 224733
Number of extensions: 6518333
Number of successful extensions: 11122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11060
Number of HSP's gapped (non-prelim): 33
length of query: 1120
length of database: 73,234,838
effective HSP length: 98
effective length of query: 1022
effective length of database: 51,211,004
effective search space: 52337646088
effective search space used: 52337646088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 71 (32.7 bits)
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