GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000473-TA|BGIBMGA000473-PA|IPR004859|Putative 5-3
exonuclease
         (1120 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...   338   2e-92
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...   166   9e-41
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    33   1.5  
Z81557-13|CAB04532.2|  277|Caenorhabditis elegans Hypothetical p...    31   4.6  
U97016-10|AAP68963.1|  181|Caenorhabditis elegans Hypothetical p...    31   6.1  
U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical pr...    31   6.1  
U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical pr...    31   6.1  
Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    30   8.1  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    30   8.1  

>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score =  338 bits (830), Expect = 2e-92
 Identities = 161/291 (55%), Positives = 199/291 (68%), Gaps = 10/291 (3%)

Query: 1   MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXXXXXXXXVLPTEKRFDSNCITPGTVFMAR 60
           MA+DGVAPRAKMNQQR RRF S                ++P+E RFDSNCITPGT FM R
Sbjct: 83  MAVDGVAPRAKMNQQRARRFMSARTAHTQLAKALENGEIMPSEARFDSNCITPGTYFMTR 142

Query: 61  LHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPNTRHCL 120
           LH++L  ++K K +TD  W   K+ILSGH  PGEGEHKIMD+IR  R+   YDPNTRHC+
Sbjct: 143 LHQKLDDWIKTKSATDSRWQGRKIILSGHNVPGEGEHKIMDFIRTERAGSSYDPNTRHCM 202

Query: 121 YGLDADLIMLGMCTHEPHFALLREEVKFG----RTTQRAT-TPEETN-----FXXXXXXX 170
           YGLDADLIMLG+ +HEPHF+LLREEV F     +   +AT  P+ T+     F       
Sbjct: 203 YGLDADLIMLGIVSHEPHFSLLREEVTFNTRPRKNDNKATKKPKRTDSDVKKFHLLHLSL 262

Query: 171 XXXXXXQEFIAIKDKLPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNT 230
                  EF  +KD LPF Y++E+IVDDW+L+G LVGNDF+P+LPN+H+++DALPLLY+T
Sbjct: 263 LREYLAWEFADVKDSLPFEYEMERIVDDWILLGLLVGNDFLPHLPNIHIHDDALPLLYST 322

Query: 231 YMTVLPKLDGYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEK 281
           Y  VLP LDGYINEAG LNL RFE F+ EL+  DK  F +   D ++ E K
Sbjct: 323 YKKVLPTLDGYINEAGYLNLSRFEAFLAELALNDKTSFMERLEDEQFMESK 373



 Score =  294 bits (721), Expect = 3e-79
 Identities = 145/357 (40%), Positives = 211/357 (59%), Gaps = 19/357 (5%)

Query: 353 EFILHKKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPY 412
           +F  HKK YY +KL Y  ++ + L +QAEGYVRAIQWNL+YYY GC SW WFYPHHYAP+
Sbjct: 491 QFKRHKKTYYSDKLRYKNISKQQLREQAEGYVRAIQWNLHYYYHGCVSWSWFYPHHYAPF 550

Query: 413 ISDIKGFKDLKIDFELGEPFKPFEQLLAVLPAASKHLLPTPFHDLMTDE--DSPIVHYYP 470
           ISD++GF  ++++FEL EPF PFEQLLAVLP AS   LP P  +LM+ +   SPI  +YP
Sbjct: 551 ISDVRGFVGMRMEFELSEPFHPFEQLLAVLPEASADCLPRPLRELMSSDPAKSPICDFYP 610

Query: 471 VHFDTDLNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPGPMLVYSWSST 530
            +F+TDLNGK N+WEAVVLIPFI+E  LL A+     RLT EE  RN  G         +
Sbjct: 611 ANFETDLNGKRNEWEAVVLIPFIEEKRLLEAIEAKRSRLTSEENARNSHG---------S 661

Query: 531 SLGVVDAPQYFPSIKECHAFEKRVWRNELDVPEEQLKKGMLPNARRDMLFPGFPTMRHLK 590
            +  + +P+   S  +       + ++   +P  Q+K G+LPN + D+ FPGFPTM+HL 
Sbjct: 662 HIQCISSPEPPNSQGQWRTVRSEIPQDSFRIPRSQVKWGLLPNVKMDVYFPGFPTMKHLS 721

Query: 591 YKSSHKMAKVKVFDLPARNSSVIIELIRDKDEDSLERVANELLGKVIWVGWPHLTRAKVI 650
           +    + A   +F + +R  S+++++  ++    +  + +EL  + + + WP L  AK+ 
Sbjct: 722 HLGELRFANCNIFGMASRKESMVLKVENERAHTDIIELGSELCDEEVCIDWPILKVAKID 781

Query: 651 SVSNEKTRLHYVDKQNNNVNGTSLYTTVQNSGNLHKQWLGERNTIIEHNMNRLGIEL 707
           S+     ++  V K ++ +           S    +QW    N + EH M R  IE+
Sbjct: 782 SIWGGDDKI--VRKCDDEI------IVKDMSEEEKRQWQAHANQLTEHLMTRFAIEI 830



 Score = 35.1 bits (77), Expect = 0.28
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 26/149 (17%)

Query: 933  YTRRCAVTG-AWQYSDRCVQLVKDYAQNFPELEK-------KYQDVLQWIK----NQPFR 980
            +T +  VT   W Y++   +LV +Y + FP++ K         QD + + +    N+  R
Sbjct: 1043 HTNQRGVTNKVWFYTNLATRLVSEYRRKFPDVWKYLETIGLTQQDDVYYTEDIWSNEKTR 1102

Query: 981  RALRRDC-----GSEALEPEEMKALADNIDKQL----EILNA--NERKITMQ---VKWNL 1026
                 +      G  +LE E++K      D+QL    E++ A  +E+K  M    +    
Sbjct: 1103 EKRFGELSEFLGGLPSLEAEQLKCGTVYADRQLITEIEMILAEPDEKKPVMNKYMMAPGA 1162

Query: 1027 LYKAELHAGEVSPDRAADYRLYDRVVCVA 1055
            L++ EL+ G+V  D AAD+++ DRV  ++
Sbjct: 1163 LFRYELYNGKVHADPAADFQILDRVALMS 1191


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score =  166 bits (403), Expect = 9e-41
 Identities = 81/156 (51%), Positives = 102/156 (65%), Gaps = 11/156 (7%)

Query: 1   MAIDGVAPRAKMNQQRGRRFRSXXXXXXXXXX-------XXXXXXVLPTEKR----FDSN 49
           MAIDGVAPRAKMNQQR RRFR+                        +P +K+    FDSN
Sbjct: 100 MAIDGVAPRAKMNQQRSRRFRASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSN 159

Query: 50  CITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQ 109
           CITPGT FMARL + L+Y++  +++ D  W+ +++ILS    PGEGEHKIMDY+R  R  
Sbjct: 160 CITPGTPFMARLADALRYYIHDRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGN 219

Query: 110 PDYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREE 145
           P +DPNT HCL G DADLIMLG+ THE +F ++REE
Sbjct: 220 PAHDPNTVHCLCGADADLIMLGIATHEANFNIIREE 255



 Score =  158 bits (384), Expect = 2e-38
 Identities = 75/169 (44%), Positives = 98/169 (57%), Gaps = 1/169 (0%)

Query: 358 KKDYYMNKLDYSKVTDEVLADQAEGYVRAIQWNLYYYYKGCPSWCWFYPHHYAPYISDIK 417
           K  YY  K D      E     A  YV  + W L YYY+GC SW W++P+HYAP+ SD +
Sbjct: 460 KDRYYRAKFDVGSDDIEFRHRVAWAYVEGLCWVLRYYYQGCASWDWYFPYHYAPFASDFE 519

Query: 418 GFKDLKIDFELG-EPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTD 476
              + + DF    +PF P EQL++V PAASK  LP  +  LM  +DSPI+  YP  F  D
Sbjct: 520 TVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMIQDDSPIIDLYPADFRID 579

Query: 477 LNGKINDWEAVVLIPFIDETNLLSAMAPCYQRLTDEEIKRNQPGPMLVY 525
           LNGK   W+ V L+PF+DET LL+ +   Y  LT EE +RN  GP  ++
Sbjct: 580 LNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQRNTRGPNRIF 628



 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 34/99 (34%), Positives = 61/99 (61%)

Query: 186 LPFPYDIEKIVDDWVLMGFLVGNDFIPNLPNMHVNNDALPLLYNTYMTVLPKLDGYINEA 245
           LPF +D+E+ +DDWV + F VGNDF+P+LP++ +   A+  L   Y  ++ ++ GY+ + 
Sbjct: 321 LPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIREGAIDRLIKLYKEMVYQMKGYLTKD 380

Query: 246 GDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKTGR 284
           G   L+R E+ M+ L +++ E F+    D + F+ +  R
Sbjct: 381 GIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQARMCR 419


>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
           protein C50C3.2 protein.
          Length = 2107

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 243 NEAGDLNLERFEIFMQELSK-IDKEQFQDTYTDLKYFEEKTGRRPNANERREYKANNNET 301
           ++   L +E  ++ + +  K +  E+ + TY +LK  E + GR+ +  E R+  A+  E 
Sbjct: 535 DQLDSLKVEMVDMMLDDQQKNMANEELRKTYENLKKIEMEVGRQASQKEARK-AADRTEA 593

Query: 302 FNVDV-NEIKGNHLDNDLQALINATDNM 328
           F   V N I  N + +D   +++ T N+
Sbjct: 594 FVGRVQNWIDNNQIQDDTD-IVSETVNL 620


>Z81557-13|CAB04532.2|  277|Caenorhabditis elegans Hypothetical
           protein F59A1.8 protein.
          Length = 277

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 249 NLERFEIFMQELSKIDKEQFQDTYTDLKYFEE-KTGRRPNANERR 292
           N +RF+IF+  ++  D E+ +DT    K+FE  K   R   +E R
Sbjct: 198 NFKRFDIFLDNVTVSDAEKIRDTIMRSKHFEHCKIYTRKQRDESR 242


>U97016-10|AAP68963.1|  181|Caenorhabditis elegans Hypothetical
           protein B0261.8 protein.
          Length = 181

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 258 QELSKIDKEQFQDTYTDLKYFEEKTGRRPNANERREYKANNNETFNVDVNE 308
           +EL   +KE   D    L+   EK     N NE++E    N+ T N D+NE
Sbjct: 106 EELPIPEKEAQVDQEDTLENLFEKETESNNTNEQQENVETNDTTSNFDLNE 156


>U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical
           protein C06A6.2a protein.
          Length = 639

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 410 APYISDIKGFKD----LKIDFELGEPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPI 465
           AP  S++K   +    LK+D E G P K  +Q +   P +S+ ++   ++D     ++PI
Sbjct: 408 APNYSELKQMLEKNNILKVDNENGPPLKRVKQEIESPPGSSRMIV---YNDTRKTTNAPI 464

Query: 466 VHYYPVHFDTDLNGKINDWEAVVLIP 491
             + P     DL  K+ D E V  +P
Sbjct: 465 STWVPPR--EDLTAKVKD-ETVQSVP 487


>U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A6.2b protein.
          Length = 642

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 410 APYISDIKGFKD----LKIDFELGEPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPI 465
           AP  S++K   +    LK+D E G P K  +Q +   P +S+ ++   ++D     ++PI
Sbjct: 408 APNYSELKQMLEKNNILKVDNENGPPLKRVKQEIESPPGSSRMIV---YNDTRKTTNAPI 464

Query: 466 VHYYPVHFDTDLNGKINDWEAVVLIP 491
             + P     DL  K+ D E V  +P
Sbjct: 465 STWVPPR--EDLTAKVKD-ETVQSVP 487


>Z81039-3|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
            C25D7.3 protein.
          Length = 2150

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 424  IDFELGEPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTDLNGKIND 483
            I+ ++ EP K FE ++  LP      +P P  ++ +   S       +  +TD NG IN 
Sbjct: 1390 IEQQIEEPDKVFEPIIEALPLFETSPVPAPEGNIPSRAHSSDDDVQVISSETDPNGPINL 1449

Query: 484  WEAV 487
             E V
Sbjct: 1450 VEQV 1453


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
            protein.
          Length = 2150

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 424  IDFELGEPFKPFEQLLAVLPAASKHLLPTPFHDLMTDEDSPIVHYYPVHFDTDLNGKIND 483
            I+ ++ EP K FE ++  LP      +P P  ++ +   S       +  +TD NG IN 
Sbjct: 1390 IEQQIEEPDKVFEPIIEALPLFETSPVPAPEGNIPSRAHSSDDDVQVISSETDPNGPINL 1449

Query: 484  WEAV 487
             E V
Sbjct: 1450 VEQV 1453


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,171,483
Number of Sequences: 27539
Number of extensions: 1159861
Number of successful extensions: 2794
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2772
Number of HSP's gapped (non-prelim): 21
length of query: 1120
length of database: 12,573,161
effective HSP length: 89
effective length of query: 1031
effective length of database: 10,122,190
effective search space: 10435977890
effective search space used: 10435977890
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)