GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000473-TA|BGIBMGA000473-PA|IPR004859|Putative 5-3
exonuclease
         (1120 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        29   0.28 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        29   0.28 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        29   0.28 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   2.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   2.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   2.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   3.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   8.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 240 GYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKT 282
           GY+   G  N+E  +  + +L K+ +E+  D + D+    EKT
Sbjct: 310 GYMTNNGVNNVEAVQKELTDLGKLGEEEKADWWKDIMLLNEKT 352


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 240 GYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKT 282
           GY+   G  N+E  +  + +L K+ +E+  D + D+    EKT
Sbjct: 310 GYMTNNGVNNVEAVQKELTDLGKLGEEEKADWWKDIMLLNEKT 352


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 240 GYINEAGDLNLERFEIFMQELSKIDKEQFQDTYTDLKYFEEKT 282
           GY+   G  N+E  +  + +L K+ +E+  D + D+    EKT
Sbjct: 310 GYMTNNGVNNVEAVQKELTDLGKLGEEEKADWWKDIMLLNEKT 352


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 308 EIKGNHLDNDLQALINATDN 327
           E+K + L N LQAL   TDN
Sbjct: 34  EVKQSFLKNQLQALFQPTDN 53


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 308 EIKGNHLDNDLQALINATDN 327
           E+K + L N LQAL   TDN
Sbjct: 34  EVKQSFLKNQLQALFQPTDN 53


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 308 EIKGNHLDNDLQALINATDN 327
           E+K + L N LQAL   TDN
Sbjct: 34  EVKQSFLKNQLQALFQPTDN 53


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 269  QDTYTDLKYFEEKTGRRPNANER-REYKANNNETFNVDVNEIK 310
            Q  Y +L+  ++K G+ P+   R  +  ANN++  N  V + K
Sbjct: 968  QSEYYELEVKDQKNGKPPSVVSRSTQTSANNDKDTNAVVTQSK 1010


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 737 EWCEVPCGYAYQAVVRDV 754
           +W EV  GY YQ +V DV
Sbjct: 433 DWEEVYNGYIYQKMVADV 450


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 737 EWCEVPCGYAYQAVVRDV 754
           +W EV  GY YQ +V DV
Sbjct: 433 DWEEVYNGYIYQKMVADV 450


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,724
Number of Sequences: 429
Number of extensions: 13865
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 9
length of query: 1120
length of database: 140,377
effective HSP length: 65
effective length of query: 1055
effective length of database: 112,492
effective search space: 118679060
effective search space used: 118679060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)