Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000472-TA|BGIBMGA000472-PA|IPR003439|ABC transporter
related
         (590 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    98   1e-22
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    98   1e-22
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    29   0.090
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   3.4  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   7.8  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   7.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 98.3 bits (234), Expect = 1e-22
 Identities = 70/280 (25%), Positives = 129/280 (46%), Gaps = 19/280 (6%)

Query: 23  SFFQRLTGGVKTGVILKDVSFTTHSGEVTAILGSKGSGKRALLDVIARRVPSK----GHV 78
           +  +R    V+   ILK+V    + GE+ AILGS G+GK  LL+ +     S     G  
Sbjct: 79  NLIKRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLR 138

Query: 79  LLEGVPLEEEQFNINCALVRHSTRLLPGLSVQQTLALSLT-----KISGYLKSSKVKQVM 133
            + G+P+  +      A V+     +  L+V++ L           IS   + ++V++V+
Sbjct: 139 CVNGIPVSSKTLASQSAYVQQDDLFIGTLTVKEHLIFQALLRMDRDISYSQRMARVEEVI 198

Query: 134 ADMALSQVANKCV------TNLTKSEYRRLVIGVQLIRDPIILLLDEPTWDLDPLNTYLV 187
           +D+ALS+  N  +        ++  E +RL    +++ +P ++  DEPT  LD      V
Sbjct: 199 SDLALSKCQNTPIGILGRIKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTV 258

Query: 188 ISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVYLCLGDVVYAGPTRNLLDYFGSIGFP 247
           + +L   A   G  +I T+ +P S+V+   D+++ +  G   + G       +F  +  P
Sbjct: 259 MQVLKEMAMT-GKTVICTIHQPSSEVYSMFDKLLLMSEGRTAFLGSPEEAETFFRELEAP 317

Query: 248 CPQLENPLMYYLCLSTVDRRSRERFIESNHQIAALVEKFK 287
           CP+  NP  Y++ L  +     E    S   +  + +KF+
Sbjct: 318 CPRNYNPADYFIQLLAIVPEKEE---SSRQAVNLICDKFE 354


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 98.3 bits (234), Expect = 1e-22
 Identities = 70/280 (25%), Positives = 129/280 (46%), Gaps = 19/280 (6%)

Query: 23  SFFQRLTGGVKTGVILKDVSFTTHSGEVTAILGSKGSGKRALLDVIARRVPSK----GHV 78
           +  +R    V+   ILK+V    + GE+ AILGS G+GK  LL+ +     S     G  
Sbjct: 79  NLIKRKDSPVQKKHILKNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLR 138

Query: 79  LLEGVPLEEEQFNINCALVRHSTRLLPGLSVQQTLALSLT-----KISGYLKSSKVKQVM 133
            + G+P+  +      A V+     +  L+V++ L           IS   + ++V++V+
Sbjct: 139 CVNGIPVSSKTLASQSAYVQQDDLFIGTLTVKEHLIFQALLRMDRDISYSQRMARVEEVI 198

Query: 134 ADMALSQVANKCV------TNLTKSEYRRLVIGVQLIRDPIILLLDEPTWDLDPLNTYLV 187
           +D+ALS+  N  +        ++  E +RL    +++ +P ++  DEPT  LD      V
Sbjct: 199 SDLALSKCQNTPIGILGRIKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTV 258

Query: 188 ISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVYLCLGDVVYAGPTRNLLDYFGSIGFP 247
           + +L   A   G  +I T+ +P S+V+   D+++ +  G   + G       +F  +  P
Sbjct: 259 MQVLKEMAMT-GKTVICTIHQPSSEVYSMFDKLLLMSEGRTAFLGSPEEAETFFRELEAP 317

Query: 248 CPQLENPLMYYLCLSTVDRRSRERFIESNHQIAALVEKFK 287
           CP+  NP  Y++ L  +     E    S   +  + +KF+
Sbjct: 318 CPRNYNPADYFIQLLAIVPEKEE---SSRQAVNLICDKFE 354


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 29.1 bits (62), Expect = 0.090
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 188 ISILSNAAKKYGT-AIILTMEKPRSDVFPFLDRVVY 222
           + +  N+ KK  T A+ L +E+ RS++ PFL   +Y
Sbjct: 27  VQLRLNSIKKLSTIALALGVERTRSELIPFLTETIY 62


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)

Query: 430 FVKNGLNAAIVNLYITCIYVMLASGVLRSYK 460
           F K  LN+ ++++Y   + + L + ++RS+K
Sbjct: 167 FFKTFLNSCLMDVYYEFLLISLINILIRSFK 197


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 348 RLLCLPIYFFILWIFY 363
           R LCLP Y +  ++ Y
Sbjct: 78  RFLCLPFYSYFFYLSY 93


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 348 RLLCLPIYFFILWIFY 363
           R LCLP Y +  ++ Y
Sbjct: 34  RFLCLPFYSYFFYLSY 49


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.141    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,839
Number of Sequences: 317
Number of extensions: 5974
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 9
length of query: 590
length of database: 114,650
effective HSP length: 61
effective length of query: 529
effective length of database: 95,313
effective search space: 50420577
effective search space used: 50420577
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)