GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000472-TA|BGIBMGA000472-PA|IPR003439|ABC transporter
related
         (590 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   2.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   3.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   3.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 442 LYITCIYVMLASGVLRSYKGFEDWLHY 468
           ++  CI +  A GV R Y G  D + Y
Sbjct: 459 MFFECIAISWAFGVNRFYDGIRDMIGY 485


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 442 LYITCIYVMLASGVLRSYKGFEDWLHY 468
           ++  CI +  A GV R Y G  D + Y
Sbjct: 512 MFFECIAISWAFGVNRFYDGIRDMIGY 538


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 369 LNPRETQCSYCPFSEIFIVYCKFLRSRILADISESLDYIHFSLVLWSSYIYAEQQ 423
           + PR+  C     S+ F    K  R  +++ I   + +  F+L  WS+Y++ E++
Sbjct: 393 MQPRKKNCCRSWLSK-FPTRSK--RIDVISRIFFPIVFAFFNLAYWSTYLFREEE 444


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 369 LNPRETQCSYCPFSEIFIVYCKFLRSRILADISESLDYIHFSLVLWSSYIYAEQQ 423
           + PR+  C     S+ F    K  R  +++ I   + +  F+L  WS+Y++ E++
Sbjct: 393 MQPRKKNCCRSWLSK-FPTRSK--RIDVISRIFFPIVFAFFNLAYWSTYLFREEE 444


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.141    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,223
Number of Sequences: 429
Number of extensions: 7018
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 590
length of database: 140,377
effective HSP length: 61
effective length of query: 529
effective length of database: 114,208
effective search space: 60416032
effective search space used: 60416032
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)