Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000471-TA|BGIBMGA000471-PA|undefined
         (204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   1.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.5  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   5.9  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 114 PNMCSNDGVDLLMRRSKDFPGILSPKIEIATKVRIDEVWNQSCVGH 159
           P+ C+ + +DLL +     P      IE+ T    DE+ + +C+ H
Sbjct: 275 PHNCTKNAMDLLHKMLTYVPSKRISAIEVLTHPFFDELRDPNCMYH 320


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 97   CTILAQYLGALNDVLFPPNMCS---NDGVDLLMRRSKDFPGILSPKIEIATKVRIDEVWN 153
            C +LA Y   L+D+            D  D+++   KD  G+L PKI   T  +    W 
Sbjct: 1242 CELLA-YFETLDDISVASRYKGWVITDEYDMMLLARKDGSGVLEPKIAANTVNQYPSEWE 1300

Query: 154  Q 154
            +
Sbjct: 1301 K 1301


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 88  WSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGVDLLM 126
           WS +CV    T  A ++  LN  LFP +      + +L+
Sbjct: 115 WSTECVEERRTTYAPFIEELNS-LFPSDSIDRSKIRVLV 152


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 68 ALNNICCLLKDETIYCELVQW 88
          A+NN+  LL++++I  E V W
Sbjct: 4  AINNVLLLLREDSISLETVLW 24


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 901,476
Number of Sequences: 5004
Number of extensions: 37541
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 4
length of query: 204
length of database: 2,362,478
effective HSP length: 70
effective length of query: 134
effective length of database: 2,012,198
effective search space: 269634532
effective search space used: 269634532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)