Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000471-TA|BGIBMGA000471-PA|undefined
         (204 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39765| Best HMM Match : Chlam_OMP6 (HMM E-Value=7.3)                42   3e-04
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  29   2.0  
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)                   29   2.7  
SB_39291| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_50708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_13592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_39765| Best HMM Match : Chlam_OMP6 (HMM E-Value=7.3)
          Length = 198

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 1   MP-KIIELTVEIEIQRVSCPG-VWLCQDGRVSLSVYALGTSYQTCMLPPIFPLTFKDVFY 58
           MP K I  TVE++   V+CPG + L     V +  + LG + +T  +   FPL F +   
Sbjct: 105 MPQKAITCTVELDAYTVTCPGTLHLADRNMVYMLFHILGQTNRTKSVFATFPLNFNERMV 164

Query: 59  FRKRFQETCALNNICCLLKDETIYCEL 85
           F + F       ++  LL+ +T+ C L
Sbjct: 165 FERTFTGVSEPTDVVDLLEGKTLRCIL 191


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 1    MPKIIELTVEIEIQRVSCPGVWLCQDGRVSLSVYALGTSYQTCML 45
            +P ++ L  E E  R++CP +WL       +SV++   S   C L
Sbjct: 1044 IPSVVWLVREDEQYRLTCPLMWLAASADSRVSVWSADWSKDFCEL 1088


>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
          Length = 1485

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 140 IEIATKVRIDEVWNQSCVGHFKQTPCH-CDNDSTRQK 175
           I I TK  ++E WN+  +G   +  CH C+  +T +K
Sbjct: 111 IAIGTKDCVEEFWNEETLGTENKVICHKCNLKTTTEK 147


>SB_39291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 15  RVSCP-GVWLCQDGRVSLSVYALGTSYQT 42
           RV CP GVW CQ  R  ++  A   S QT
Sbjct: 209 RVDCPPGVWTCQKKREEIAQQAEAASGQT 237


>SB_50708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 17  SCPGVWLCQDGRVSLSVYALGTSYQTCMLPPIFPLTFKDVFYFRKR 62
           +CP  +     RV +    + T+  T   PP +PLT K V   R+R
Sbjct: 100 ACPPAYPLTLTRVLVRRQRVATNLDTRACPPAYPLTLKRVLVRRQR 145



 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 9  VEIEIQRVSCPGVWLCQDGRVSLSVYALGTSYQTCMLPPIFPLTFKDVFYFRKR 62
          V   +   +CP  +     RV +    + T++ T   PP +PLT   V   R+R
Sbjct: 11 VSTNLDTRACPPAYPLTLTRVLVRRQRVATNHDTRACPPAYPLTLTRVLVRRQR 64


>SB_13592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 140 IEIATKVRIDEVWNQSCVGHFKQTPCHCDNDST 172
           I I TK  ++E WN+  +G   +  CH  N  T
Sbjct: 39  IAIGTKDCVEEFWNEETLGTENKVTCHKCNLKT 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.139    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,749,283
Number of Sequences: 59808
Number of extensions: 276982
Number of successful extensions: 483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 13
length of query: 204
length of database: 16,821,457
effective HSP length: 79
effective length of query: 125
effective length of database: 12,096,625
effective search space: 1512078125
effective search space used: 1512078125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)