GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000471-TA|BGIBMGA000471-PA|undefined
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0135 - 989616-989702,990746-991013,991229-991566                 29   2.6  
04_04_0995 + 29985473-29985625,29986372-29986446,29986537-299870...    29   2.6  

>07_01_0135 - 989616-989702,990746-991013,991229-991566
          Length = 230

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 113 PPNMCSNDGVDLLMRRSKDFPGILSPKIEIATKVRIDEVWNQSCVGHFKQTPCHC 167
           P   CS++ VD+L  +     G+  P+   A +V+   +W +     +  TPC+C
Sbjct: 38  PVCQCSDNPVDVLFGQRTATSGLWKPQ---AWEVQRRRIWQRQVQFGYSCTPCNC 89


>04_04_0995 +
           29985473-29985625,29986372-29986446,29986537-29987044,
           29987349-29987734,29988418-29988641,29988728-29988893,
           29989095-29989226
          Length = 547

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 30  SLSVYALGTSYQTCMLPPIFPLTFKDVFYFRKRFQETCALNNICCLLKDETIYCE 84
           + SV  L     TC++PP +P      F    ++ +T  ++++C +L  +TI+ +
Sbjct: 108 TFSVQHLAPISFTCLMPPSYPSHHAPYFTLSSQWLDTVKVSSLCLML--DTIWSQ 160


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.139    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,696,573
Number of Sequences: 37544
Number of extensions: 227930
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 2
length of query: 204
length of database: 14,793,348
effective HSP length: 79
effective length of query: 125
effective length of database: 11,827,372
effective search space: 1478421500
effective search space used: 1478421500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)