GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000471-TA|BGIBMGA000471-PA|undefined
         (204 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl...    29   1.8  
U41547-4|AAA83194.3|  376|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    29   3.1  
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    27   7.1  
U80436-4|AAC71111.1|  552|Caenorhabditis elegans Uncoordinated p...    27   7.1  
U80436-3|AAL06029.3|  633|Caenorhabditis elegans Uncoordinated p...    27   7.1  
U80436-2|AAC71110.1|  928|Caenorhabditis elegans Uncoordinated p...    27   7.1  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    27   7.1  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    27   7.1  
Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
           protein 17 protein.
          Length = 1146

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 71  NICCLLKDETIYCELVQWSEDCVSNECTILAQYLGALNDVLF 112
           N+  ++KDE   C      EDCV  E + +A+Y G L D  +
Sbjct: 282 NVIEMMKDEPFNCV-----EDCVGEEYSSVAKYAGQLADAFY 318


>U41547-4|AAA83194.3|  376|Caenorhabditis elegans Hypothetical
           protein F22A3.1 protein.
          Length = 376

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 111 LFPPNMCSNDGVDLLMRRSKDFPGIL 136
           L PP  CS  G+DLL    KDF  IL
Sbjct: 105 LQPPRNCSITGIDLLGMSQKDFEMIL 130


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 83  CELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSN 119
           CE+V  S+  +   CT L  +   ++  L  PN+C N
Sbjct: 645 CEIVSESDGILEARCTHLTDFAIIVDAALNDPNVCDN 681


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 83  CELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSN 119
           CE+V  S+  +   CT L  +   ++  L  PN+C N
Sbjct: 627 CEIVSESDGILEARCTHLTDFAIIVDAALNDPNVCDN 663


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 105 GALNDVLFPPNMCSNDGVDLLMRRSKDFPGILSPKIEIATKVRIDEVWN 153
           G  N V+   NM + DG+  +  RS  FP       E   K  +   WN
Sbjct: 567 GERNGVIIAENMTAKDGIGKIQPRSLPFPYSRVEDYEAVLKQPLGLEWN 615


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
            protein 73, isoform f protein.
          Length = 2140

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 77   KDETIYCELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGV 122
            K   +  ELV+  +D V +  +++  Y+G LN +  P ++   D +
Sbjct: 1809 KRSYVLMELVETEQDYVKDLTSVVEGYIGNLNKMDLPADLVGKDKI 1854


>U80436-4|AAC71111.1|  552|Caenorhabditis elegans Uncoordinated
           protein 73, isoform d protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 77  KDETIYCELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGV 122
           K   +  ELV+  +D V +  +++  Y+G LN +  P ++   D +
Sbjct: 163 KRSYVLMELVETEQDYVKDLTSVVEGYIGNLNKMDLPADLVGKDKI 208


>U80436-3|AAL06029.3|  633|Caenorhabditis elegans Uncoordinated
           protein 73, isoform e protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 77  KDETIYCELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGV 122
           K   +  ELV+  +D V +  +++  Y+G LN +  P ++   D +
Sbjct: 244 KRSYVLMELVETEQDYVKDLTSVVEGYIGNLNKMDLPADLVGKDKI 289


>U80436-2|AAC71110.1|  928|Caenorhabditis elegans Uncoordinated
           protein 73, isoform c protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 77  KDETIYCELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGV 122
           K   +  ELV+  +D V +  +++  Y+G LN +  P ++   D +
Sbjct: 249 KRSYVLMELVETEQDYVKDLTSVVEGYIGNLNKMDLPADLVGKDKI 294


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
            protein 73, isoform a protein.
          Length = 2488

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 77   KDETIYCELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGV 122
            K   +  ELV+  +D V +  +++  Y+G LN +  P ++   D +
Sbjct: 1809 KRSYVLMELVETEQDYVKDLTSVVEGYIGNLNKMDLPADLVGKDKI 1854


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73A protein.
          Length = 2488

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 77   KDETIYCELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGV 122
            K   +  ELV+  +D V +  +++  Y+G LN +  P ++   D +
Sbjct: 1809 KRSYVLMELVETEQDYVKDLTSVVEGYIGNLNKMDLPADLVGKDKI 1854


>Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical
           protein ZK550.3 protein.
          Length = 772

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 40  YQTCMLPPIFPLTFKDVFYFRKRFQETCALN 70
           YQ C   PIF L      Y+RK + E  AL+
Sbjct: 672 YQPCSFTPIFALQPHMSMYYRKLWAEMLALD 702


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.139    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,071,474
Number of Sequences: 27539
Number of extensions: 217250
Number of successful extensions: 573
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 12
length of query: 204
length of database: 12,573,161
effective HSP length: 78
effective length of query: 126
effective length of database: 10,425,119
effective search space: 1313564994
effective search space used: 1313564994
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)