GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000471-TA|BGIBMGA000471-PA|undefined
         (204 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ...    28   3.9  
At5g47435.2 68418.m05846 formyltetrahydrofolate deformylase, put...    27   8.9  
At5g47435.1 68418.m05845 formyltetrahydrofolate deformylase, put...    27   8.9  
At4g27160.1 68417.m03902 2S seed storage protein 3 / 2S albumin ...    27   8.9  
At4g27150.1 68417.m03901 2S seed storage protein 2 / 2S albumin ...    27   8.9  

>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
           weak similarity to Nucleoporin NUP42 (Nuclear pore
           protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
           cerevisiae]; contains Pfam profile  PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 435

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 151 VWNQSCVGHFKQTPCHCDNDSTRQKTKKVQH 181
           +W  +C GH+K  PC    D + ++ + V +
Sbjct: 125 MWKLTCYGHWKYFPCDVTGDISYEELRAVAY 155


>At5g47435.2 68418.m05846 formyltetrahydrofolate deformylase,
           putative similar to formyltetrahydrofolate deformylase
           [strain PCC 6803- Synechocystis sp.] SWISS-PROT:Q55135
          Length = 323

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 70  NNICCLLKDETIYCELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGVDLLMRR 128
           NN     + E I+ + V+W    V  +   +AQ  GALN V+  P++     + LL+ +
Sbjct: 77  NNNVFYSRSEFIF-DPVKWPRSQVDEDFQTIAQRYGALNSVVRVPSIDPKYKIALLLSK 134


>At5g47435.1 68418.m05845 formyltetrahydrofolate deformylase,
           putative similar to formyltetrahydrofolate deformylase
           [strain PCC 6803- Synechocystis sp.] SWISS-PROT:Q55135
          Length = 323

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 70  NNICCLLKDETIYCELVQWSEDCVSNECTILAQYLGALNDVLFPPNMCSNDGVDLLMRR 128
           NN     + E I+ + V+W    V  +   +AQ  GALN V+  P++     + LL+ +
Sbjct: 77  NNNVFYSRSEFIF-DPVKWPRSQVDEDFQTIAQRYGALNSVVRVPSIDPKYKIALLLSK 134


>At4g27160.1 68417.m03902 2S seed storage protein 3 / 2S albumin
          storage protein / NWMU2-2S albumin 3 identical to
          SP|P15459
          Length = 164

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 67 CALNNICCLLKDETIYCELVQWSEDCVSN 95
          CA   +C LL + +IY  +V++ ED  SN
Sbjct: 9  CATLALCFLLTNASIYRTVVEFEEDDASN 37


>At4g27150.1 68417.m03901 2S seed storage protein 2 / 2S albumin
          storage protein / NWMU2-2S albumin 2 identical to
          SP|P15458
          Length = 170

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 67 CALNNICCLLKDETIYCELVQWSEDCVSN 95
          CA   +C LL + +IY  +V++ ED  SN
Sbjct: 9  CATFALCFLLTNASIYRTVVEFDEDDASN 37


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.139    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,724,768
Number of Sequences: 28952
Number of extensions: 195653
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 5
length of query: 204
length of database: 12,070,560
effective HSP length: 78
effective length of query: 126
effective length of database: 9,812,304
effective search space: 1236350304
effective search space used: 1236350304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)